UFO06778.5prime Sequence
1097 bp (1011 high quality bases) assembled on 2009-08-24
> UFO06778.5prime
CAGTCGACATGGAGACGCTGCCATGTGCCAACCAGCTGCAGGAGCACCAG
CAGCCGCAGCAGCAGCACGTGAATCTCAGCATAGATCCTAGTCTGGGTGA
GAATGTGGTCAGCATTCCCAAGGAGCTGATCCTCATTTCGCTGGTCTCCC
AGGAGCAGTCGCTATACAATCCCAAGCATCCCCACTACCGCAGCACCAAG
ATCAAGGACGAGAAATGGCTGGAGATTGGCAGCAATGTGGGTTGGTCCGA
CGTCCAGTGCAAGTCCAAGTGGAAGGCCATGAGGGATCAGTACTGCCGGG
AGCTGAAGCGCGCCAAGGCCTGCTCAAAAGCAGTGAAGTGGAAGTATTTC
AAAGAGCTGGATTTCCTGCGTCCATATGCGCTGGCAAGAAATTACAGAGG
GAGATCTGGTCAGACTTCCAATGGCGCCGTGGGTACGGTGACCCCCTTAT
CGCTGCCCATGACTACTTCCTTCAGCAGCAACAGCAGTAGCCAGAATCTA
AACCTTTCCGGCAGCATTAAAATTGAGGATGCCAGTGCATCCACGCTGCT
CGACAGCTGCAGCTTCAGTTCGCCTAGTTCAACTGATAAGAAGCCGGCAG
CCACTTTCTTGGCAAGCCATATTGGAGCCGTGCTGCAGCAGCAGCAGCAG
CAACAGCAGCATCAGCAACAAATGCACTCGCAGCCGGAAGCGAACTGGAA
CTATCTGACGGATGCGGGAGGCGGTGCTACTCCATCAATCATAGTGCAGT
GTGGAACCGCCAACACAACCACGGTGGTAGACACTCTCTACAACGAAATA
GTGGACTGCGTCAATGCCGCCAATCAGTCGAGCTCGGCAGCAACAATCAC
GTCTAATGTATCCACCACTTCAGCAGCGCACAATCAATCGACGACGCCGA
GGAGAGACGACGATCCCATACACACATTTCTCAACATGGAGAGCTACTTC
GAAAGACTGATCACGCTGATCCAGCAGAAGACTGATCTACACTACGCACG
AGAACTATCGCATGCAGCTCAGATGGAGGTGTGGGAGAAATCGCGGAAAC
TAAGAAGTCGGTGAAACATTTCAACTGATGAGGCCTAGACAAACGCA
UFO06778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8765-RA | 3082 | CG8765-RA | 118..1197 | 8..1068 | 4940 | 98.1 | Plus |
CG8765-RC | 3076 | CG8765-RC | 118..1191 | 8..1068 | 4840 | 97.6 | Plus |
CG8765-RB | 3020 | CG8765-RB | 206..1135 | 158..1068 | 4190 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19686055..19686646 | 977..392 | 2735 | 98.6 | Minus |
3L | 28110227 | 3L | 19686995..19687236 | 249..8 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 19686795..19686937 | 391..249 | 715 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2375 | 28..82 | 120 | 72.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1146 | 11..67 | 114 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6765 | 31..67 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6786 | 31..67 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6807 | 31..67 | 113 | 78.4 | Plus |
UFO06778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:43 Download gff for
UFO06778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8765-RA | 117..1218 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:39 Download gff for
UFO06778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8765-RA | 112..1213 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:43 Download gff for
UFO06778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8765-RA | 112..1213 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:43 Download gff for
UFO06778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19685986..19686646 | 392..1037 | 97 | <- | Minus |
3L | 19686795..19686936 | 250..391 | 100 | <- | Minus |
3L | 19686995..19687241 | 1..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:39 Download gff for
UFO06778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19679086..19679746 | 392..1037 | 97 | <- | Minus |
arm_3L | 19679895..19680036 | 250..391 | 100 | <- | Minus |
arm_3L | 19680095..19680341 | 1..249 | 98 | | Minus |