UFO06779.5prime Sequence
944 bp (116 high quality bases) assembled on 2009-08-24
> UFO06779.5prime
CAATCCACATGACACCATCGCCGACCAAGGAACTCTGGATTGCCACACCG
ACCATTTCTCGTCGTCCGCGCGAGGAGTTCGCCGAGAAGGGTGCCCTTAT
ATTACAGGTGGAAGATGGAGTACGGTGTGATCAATGTAAATCACATTGCC
CAGGCTTTGCCCCGCACGATTGGAGGAAAACCTGCCAGTCCTGCAAATGT
CCTCGCGAGGCGCATGCCATCTATCAGCAACAAACTACCAACGTGCATGA
GCGACTCGGCTTCAAATTGGTCTCTCCGGCGGATTCGGGAGTGGAGGCGC
GGGATCTGGGCTTCACGTGGGTTCCGCCCGGAGTGCGTGCCTCCTCGCGC
ATCACCCGCTACTTCGAGCAGCTGCCCGACGAAATGGTACCCCGGCTGGG
CGGCGAAGGCGCCTGCAGCCGGGAGCGACAGATCTCTTACCAGCTGCCCA
AACAGGACCTCTCGCTGGAGCACTGCAGGCACCTGTAGGTGCAGCACGAG
GCTTCCTTCGAGGACTTTGTGACGGCGCGAAACGAAATCGCACTGGACAT
ACCCTACATCAAGGATGCCCCCTACGATGAGCATTGTGCGCACTGAGATA
ACGAGATAGCCGCCGGCGAGCTAGTTGTGGCGGCGCCCGCTTTGTGGAGA
GCGTGATGTGGCACCCGCAGTGCTTCACCTGCAGCACCTGCAACTCGCTA
CTCGTGGACCTCACCTACTGCGTCCACGACGACGATGTCTACTGCGAGCG
CCACTATGCGGAAATGCTGAACCCCGCTGCGCTGGCTGTGATGAGTTAAT
TTTCAGTGCCGAGTACACACCTCCATGGACAACGACTGGCACTCCGGACA
CTTCTGCTGCTGGGATGCTACGAGATCCTCACGGACAGCGTTACGTCATC
CGGGACGATCATCCGTACTGCATCATTTGCTACGATAATGTGTT
UFO06779.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RM | 2905 | CG42679-RM | 333..1273 | 9..944 | 4025 | 95.5 | Plus |
| Lmpt-RB | 2916 | CG32171-RB | 344..1284 | 9..944 | 4025 | 95.5 | Plus |
| Lmpt-RG | 3028 | CG32171-RG | 456..1396 | 9..944 | 4025 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16896802..16897179 | 174..551 | 1815 | 98.7 | Plus |
| 3L | 28110227 | 3L | 16897380..16897628 | 549..795 | 1025 | 96 | Plus |
| 3L | 28110227 | 3L | 16912127..16912280 | 794..944 | 455 | 90.9 | Plus |
| 3L | 28110227 | 3L | 16866866..16866947 | 9..90 | 335 | 93.9 | Plus |
| 3L | 28110227 | 3L | 16883917..16884005 | 88..176 | 325 | 91 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:32 has no hits.
UFO06779.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:42 Download gff for
UFO06779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RB | 334..1279 | 1..944 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:28 Download gff for
UFO06779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RG | 451..1396 | 1..944 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:30 Download gff for
UFO06779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RG | 451..1396 | 1..944 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:30 Download gff for
UFO06779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16896804..16897180 | 176..552 | 98 | -> | Plus |
| 3L | 16897384..16897628 | 553..795 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:28 Download gff for
UFO06779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16889904..16890280 | 176..552 | 98 | -> | Plus |
| arm_3L | 16890484..16890728 | 553..795 | 96 | -> | Plus |
