UFO06780.5prime Sequence
1085 bp (1000 high quality bases) assembled on 2009-08-24
> UFO06780.5prime
CAGTCGACATGGATCCGCAGCAGCAGTTCTGCCTCAAATGGAACAGTTTC
TCGTCTAACTTGGCAATAACATTCTCCAATCTGTTCAAATCGGATCTACT
GGCCGATGTCATATTATCCTGCGATGGCGTAGTATTCAAAGCCCACAAAC
TTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTGAGAACACG
CCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACGCCGGACAA
CATGGCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCACGTCTCCC
AGGAGGCGCTCAACAGTTTCCTCAAGTCCGCCGAGAGTTTGCAGGTCAAA
GGTCTGTCCACGGAAACGGGACGTCTGGCGGCGCAGCAGGCACAACAACA
CATGGGCGACCTGTCGCCACTTGACTCGCCGACGGGCAGGCGGAGCGTAA
GGAACAGCCTGAGCGGCGGTAGCAGCAGCATCGTTCCCGGCGGAGTCGGA
ATCGGTCTGGGAGGAGGCGCAACGGGAGCCAACTCTATGTCCGGCATGGG
CATTGGCAACGGATTGAGCTTGGCCGGTATGGCAGCTGGCGGAGGAATGG
CGGCGGCTGCAAATGCGGCGGCCAGTAGCCTGAGCACCCTAGCGGCCAGC
GCGAATATCGTTGACAGATGCGGCAGTGCTGGCGCCAACATAATCAGCGG
ATCGGCTGCAGGGATTGGCGGCTCCCATAGCGGGGGAGCGGGTAATGGCA
GCGGCACAGTTGGAATCGGTGGCAACGGTGTCGGCAGTGGTGGCGGCAAC
AATGGACCCATTAGCCTGGAAGCGGCGCGGGCGCTGCTCACCATCTGGGC
GGATCCACTGGCATCTTGAAGCAGAATGCGACTCCCTGATGCATCCGGTG
GCAGTAGTTCTCTTCGGATGGGCTACACCCATGTGCGCCCATCTACGGCT
ATTACTACGACCTCGCGCAGAGGGCTATAGTCCGCAGTCGTATCGAGCAG
ACAGCGCGGTCGTCTGGCGAAGATGGCTTCAGTCTCGAGTGTCAGCCATC
ACAGGCGCGTACACGTCCTCGTCCAGGCCTTCTCA
UFO06780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chinmo-RG | 6089 | CG31666-RG | 1806..2845 | 8..1028 | 4635 | 97.5 | Plus |
| chinmo-RF | 5037 | CG31666-RF | 754..1793 | 8..1028 | 4635 | 97.5 | Plus |
| chinmo-RE | 6320 | CG31666-RE | 2037..3076 | 8..1028 | 4635 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1694542..1695155 | 340..946 | 2695 | 98.2 | Plus |
| 2L | 23513712 | 2L | 1694223..1694443 | 126..346 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 1690637..1690756 | 8..127 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:48 has no hits.
UFO06780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:41 Download gff for
UFO06780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chinmo-RB | 747..1774 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:06 Download gff for
UFO06780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chinmo-RE | 2030..3057 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:27 Download gff for
UFO06780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chinmo-RE | 2030..3057 | 1..1010 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:27 Download gff for
UFO06780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1690630..1690755 | 1..126 | 96 | -> | Plus |
| 2L | 1694224..1694441 | 127..344 | 100 | -> | Plus |
| 2L | 1694547..1695230 | 345..1010 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:06 Download gff for
UFO06780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1690630..1690755 | 1..126 | 96 | -> | Plus |
| arm_2L | 1694224..1694441 | 127..344 | 100 | -> | Plus |
| arm_2L | 1694547..1695230 | 345..1010 | 96 | | Plus |
