UFO06781.5prime Sequence
1093 bp (984 high quality bases) assembled on 2009-08-24
> UFO06781.5prime
CAGTCGACATGGGTTTTCCGCGCATCCTCAGCAAGAACAACAAGATCTAC
ACCAAGCTGGGCGAGTTCTGTTTGTCGGGGGATAGCTTCTGGATTGTTTG
TCACACGTGCCAAGAGGAGTTGCAGACACAGGATCAGTTCTGGAAGCACA
TACAGGATGAGCATAATTTCATGCACGGGGTGGCAAAGGAACACAGTCGT
ACATCCAGCTACTGCCTAACGGATGTGGAGGCTGCGGCGGCAGCAGCAAC
GCCAGGAAGCAGCTCCCAGCAAGGCGCCACAGCGATCAGTGTGCCTCTGG
CACTTTACACCTGCTCAACCAAGTATTCTGAGGAGGAGCAGCGGGAGGTG
GAAATGCACGAACAGCAGGTGCAACACCAAGTGCAACAGCAGCAAGCGCA
GCAGCAGCAAGCGCAGCAGCAACAACACCAACAGTCTCAGCAGCAAGGGC
ACCAGCAACACCAGGTTCAACAACAGCAGACCCACCAGCAGCTCCAACAG
CAGCGGGATGTTGCCAAGGAGCTGGCTGAACTCCATGCCAATGCGGTAGC
TGCCGCTGCAGCCTCCGCAGCTGTGGTATCCACAGGCGAAGGAACTACCC
AAAGTAACAGCGCCATCGACATTAAAATAGAGCCCAGCAGTCTGACACTT
ACACCCGAAATGCAGGCTGCTGCAGCAGCTGGGGGGACCATTTACCATCT
GCCACAGCTAGTTCCACCACCTGTACCGCCTCCACCGCCAGGGTCCGGAT
TTGTAAGCGTCAGCGCCAGTACCAGCACCTCCAATACGGTCAGCACCACG
CCACCCAATGTTCTACAGCAGCAACAGCAACTAAACATGTCTGTCGTTCC
TTCGACGGCTATGGGCCGCCGCTATGCTAGCCGCCAGTCAGGAACAGCTG
CCCAAAGGACTCTAACAAGCACGACGGCCAGCGCCGGGAGTGCTGTCTTC
TTCAGATGACGGAGAACGCTGTACGTCTGCGATTACGAGACTTGGTGTTT
GAAGTTTAGGTATAGGTCGAAGAATGGAGCTACATCGGGTAGGTCCAGGC
AAGAACGGCGGTCAATTGCGACCTGTGCAATGCCTCTTCAGCC
UFO06781.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-RB | 2269 | CG17172-RB | 101..1177 | 8..1086 | 5045 | 98.3 | Plus |
| CG43689-RH | 6858 | CG43689-RH | 2822..2914 | 387..479 | 180 | 79.6 | Plus |
| CG43689-RE | 7038 | CG43689-RE | 3086..3178 | 387..479 | 180 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23106342..23107239 | 187..1086 | 3950 | 97.9 | Plus |
| X | 23542271 | X | 23106103..23106284 | 8..189 | 910 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6931 | 334..508 | 347 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6878 | 346..504 | 338 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2518 | 361..584 | 307 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2542 | 383..624 | 306 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6899 | 399..571 | 293 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 403..501 | 245 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7030 | 414..722 | 239 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2710..2858 | 360..512 | 197 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2655 | 357..504 | 195 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6915 | 438..639 | 181 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2547 | 438..682 | 180 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6635..6950 | 375..708 | 178 | 56.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 54..175 | 387..506 | 163 | 62.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9084..9205 | 387..506 | 163 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1587 | 417..489 | 160 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2665 | 414..490 | 153 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2666 | 434..833 | 152 | 54.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 883..1033 | 350..501 | 136 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1112 | 451..504 | 135 | 72.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..206 | 427..514 | 122 | 61.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9236 | 427..514 | 122 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1564 | 442..508 | 114 | 65.7 | Plus |
UFO06781.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:40 Download gff for
UFO06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RA | 73..1163 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:41 Download gff for
UFO06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 73..1163 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:55 Download gff for
UFO06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 95..1185 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:55 Download gff for
UFO06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23106097..23106283 | 1..188 | 98 | -> | Plus |
| X | 23106344..23107247 | 189..1093 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:41 Download gff for
UFO06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 84915..85101 | 1..188 | 98 | -> | Plus |
| XHet | 85162..86065 | 189..1093 | 97 | | Plus |
