UFO06782.5prime Sequence
1107 bp (1021 high quality bases) assembled on 2009-08-24
> UFO06782.5prime
CAGTCGACATGACAATTTCCTGGCGCGCCTTGTCTCATTTCCTTATTCCG
CAGAGCGACTACGGCGAGGCCAAGACGCACCTGGAGCAGCTGCAGCAGAC
GCTCACGCACCTGGACCACCCGCACCACCACCACGCACACCATCCGCACC
ACCACCTGGGGCTCTACCATGGCGCCCTGCCCAACACATCCACCATAACC
ACAGACTCGGTGGTTTCCTGTGTCAGCTCCACACTGCCGGCGGTGGCCAA
GGCCATTTCCGCATCCTCCAGCTGCGATGGCCTGCAGTCGGAGCGCAAAA
AGTGCCCCATCAGCGATCTGGATTCAGGTGGTCATGGTCATGGTCAGGGG
CATGGCCTCATGGAGGCCATCTGCGCTGGCCAGAAGACGTCACCTATACC
ACCGCCGCCACCACCTTGCTGCTTGACCCTGGGCGAAAGCTCATCCTCGC
CGAATCCCATCGCCACGGCCGCCTTGATGAACGCTTCCACCTCCGGATCC
TCGAGCGCAGGCGGAGCAAGTGCCTCTCTCTGCAACGATCTCACACGGGA
ATCTTCCTGGTACGCCCACCATCATCATCACCACCATCACCATCACCATC
AGTTGCCCGACGAGCTGGTCATGTATGCCACGCCCACTCCCACGCCGGCA
ATCGGGAAATTCGGACTGGACACTTCCACCGAGGGTTACTTGAACGCAAG
GTACAATGTGAATGTCAAAGGCGTGCGGCATGATAGAACATCGAGTTTCT
TTGACATACCCGCTGTGACGCACCCGCACAACCATCCACACCCACATCCG
CACCCACATCCGCACCCGTACTGCTACAGATTTCCATCATCGCCACCCGC
GGGCATTCTGAAAAGAGCGACGAAGAGCAACCTCGGCCGCCGTATACTGC
AGCGACGTGTCCTCCGGGACAGCACTTTCCGCACCACACAAAGATCGGAG
CACGGCGGACTCCACCACTACGGCGGCACAGCAGCACAGCAGCAGCAGGA
GCACAGCAGCAGCAGCAGCAGCAGCAGCAACACGCACACAGCACACTGCA
GCAGCTGCTGCACTGCATCCGCACACATCACTCCCCACATGCCACAGGCA
TCAGCAG
UFO06782.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-RB | 3003 | CG6892-RB | 364..1451 | 8..1085 | 5040 | 98.4 | Plus |
Ets96B-RC | 2804 | CG6892-RC | 210..1252 | 53..1085 | 4815 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24792724..24793253 | 8..537 | 2650 | 100 | Plus |
3R | 32079331 | 3R | 24793378..24793549 | 537..708 | 860 | 100 | Plus |
3R | 32079331 | 3R | 24794323..24794444 | 708..829 | 610 | 100 | Plus |
3R | 32079331 | 3R | 24796124..24796279 | 876..1032 | 530 | 96.2 | Plus |
3R | 32079331 | 3R | 24794593..24794642 | 827..875 | 200 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:57 has no hits.
UFO06782.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:00 Download gff for
UFO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 358..1462 | 1..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:14 Download gff for
UFO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 358..1462 | 1..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:33 Download gff for
UFO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 358..1462 | 1..1095 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:33 Download gff for
UFO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24792718..24793253 | 1..537 | 99 | -> | Plus |
3R | 24793379..24793549 | 538..708 | 100 | -> | Plus |
3R | 24794324..24794444 | 709..829 | 100 | -> | Plus |
3R | 24794596..24794642 | 830..875 | 97 | -> | Plus |
3R | 24796123..24796352 | 876..1095 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:14 Download gff for
UFO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20618440..20618975 | 1..537 | 99 | -> | Plus |
arm_3R | 20619101..20619271 | 538..708 | 100 | -> | Plus |
arm_3R | 20620046..20620166 | 709..829 | 100 | -> | Plus |
arm_3R | 20620318..20620364 | 830..875 | 97 | -> | Plus |
arm_3R | 20621845..20622074 | 876..1095 | 91 | | Plus |