UFO06783.5prime Sequence
1059 bp (949 high quality bases) assembled on 2009-08-24
> UFO06783.5prime
CAGTCGACATGGAAAAGTTTAATAAAGCGCAAGCTAAAAATTTGGCTGCC
GCCCAAAAACTGGTGGACACCTACGCCTCCAGCTCCGAGGATGAAGGCGA
ACTGGATGAGAATCACATTTTGGAACTCCTATACAAGAACTACAAACCGT
CGGACAACGCAGGAAGCTCAAAGGAAGCGGCACGCACCAGTACGTTTCTG
GAAAACACTCTACACTCGGGAGCGGCAACCTGTCTCATTTGCATCGGAAG
CATTCGGCGGGTGGAGGCCATTTGGTCTTGCGAGAGCTGTTACTGCTTCT
TTCACTTGAAGTGCATCCAACGGTGGGCCAACGACAGCATGATGCAGATG
AAGGTAAAGGCGGCAGAGCAGCAGAACGGCCAGGGCCACTACAATCATCT
GGGCGAATTTGTGCCGCCCAAGCGACAGAAATCCCTTCACTGGTGCTGCC
CCAAGTGCCGCAGGGACTACCAACCGGCCGATAAGCCCACGCAGTACAAC
TGCTTCTGCGGCAAGGAGGTGAACCCCGAGAACCAGCCCTTCCTTGTGCC
CCACTCATGCGGAGAGCACTGCGGAAAGCTTTTGCAACCGAAGTGTGGGC
ACGATTGCAAGCTGCTATGTCATCCGGGGCCATGTCCTCCTTGTGCGCAG
CAGCGCAGGTCTCGTGCCTGTGTGGTAAATCTAGTCCTAGGTCCGTGAGG
TGCATTGACAAGCAGTGGACGTGTCAGCAGACTTGCAAGGAACTTCTAGC
CTGCGGCAAGCACAAATGTAATCAGGTGTGTCATCAGCCAGGAAAGTGTC
CTCCATGCACCAGCAAAAGCTTACAACCTTGCGAGTGCCAGCGGGAGTCG
AAGATGGTCAACTGCTCCGATCGGAAATGGAAGTGTCAGATGTTTGTGAG
CTCATTTGCTTGTGTTTGCACATTTGCGAGAGTGTGTCACGCTGACCCTG
CGAGATGGAGGTGTCTTTGCAGTCAGGACTGCCCATGCGCAGAATACCCA
GTTAGACCTGTATGAACGAAGAACTGTGGCGATTCTGCAAAACTTTGTCT
TTGCAGCAC
UFO06783.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15011-RA | 2631 | CG15011-RA | 26..1033 | 9..1001 | 4660 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4258336..4258947 | 733..123 | 3010 | 99.8 | Minus |
| 3L | 28110227 | 3L | 4258118..4258274 | 890..734 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 4259013..4259127 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:42 has no hits.
UFO06783.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:49 Download gff for
UFO06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15011-RA | 26..1046 | 9..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:49 Download gff for
UFO06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15011-RA | 26..1046 | 9..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:40 Download gff for
UFO06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15011-RA | 26..1046 | 9..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:40 Download gff for
UFO06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4258116..4258274 | 734..891 | 99 | <- | Minus |
| 3L | 4258336..4258946 | 124..733 | 99 | <- | Minus |
| 3L | 4259013..4259127 | 9..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:49 Download gff for
UFO06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4258116..4258274 | 734..891 | 99 | <- | Minus |
| arm_3L | 4258336..4258946 | 124..733 | 99 | <- | Minus |
| arm_3L | 4259013..4259127 | 9..123 | 100 | | Minus |
