UFO06784.5prime Sequence
1068 bp (959 high quality bases) assembled on 2009-08-24
> UFO06784.5prime
CAGTCGACATGAGTGTCCTGGCGTATCCACGTACCAACGACGAGGAGATT
TTCCGTCACTGCACCAAGGACTGCGGCATGGTGACGGCCACAGATGACTT
CCAGTACTTCGCCCTGCGTTGCATCTTCTGCAGCGAGAAGTTTCTCTACT
TCGACTCCTTCATCGGCCACATGCAGACAGTTCACCTGGGCGACCAGTCC
GTGGCGAATACCTCCTCCCGTCTCCCCTTCAATCTCGGCGAGCCCATGTC
CCTGTCCGGTCGTAATGGGGATCTGCCCAACTTCCACGAGATCGAAGACT
TAACGGACGCGGACACAGCGCTGCTGGAGCCCCAAATGGTCATCAAACAA
GAGCTCCAGGATCTGCCCTGCAGCGATGATGATGTGGTCGCCGGCGAAGA
AGACGACGATGAGCAACGGCTGAACGATTCCGAGGCCGATGAGGACGAGG
CCATATTACCCGAAAGCGATGTACCGGTGGTCAGTTCCAAGACGCGGGCA
CGCAAAAAGGTCACAAAGCAGCGCCAGAGGGACATGTCTAGCGAGCTTCT
CATCGCCGGTGACGGCGATTCATCCATGGACGACTACGGTGATCCGGATC
ACAGCTATATGGACGACAATTCCGGAGAGTACATGGACTTTGCTGGATTC
GACGGCGTTAACCACAGTGGTTTCGGAACCGAATCGGACTTTCTCAGCTA
TGATGAGATGGTGGAGGAGTCCCTGCTGGGACGCGACCGGGAGGTTACGA
TGCACATCAAGGACCGCAAGATGATCCAGTTTCTCATCCACTCGTATCAG
CGCAACCCCTTTTTGTGGACCACGGCAATGCACAGTTCCGGGATCGCGTT
AAGCGCGCCGCTTCCTCGACTGATTGTGCTGGAGTTCAGAGCCGGTTTAA
CATCTCGCTGGCCAAGACGCCATCACCCGTAAGTGGGACACTGCGCACGT
ATACAGCGGGAGTGCCATCGCATGCTCTGGAAAGAACAACATCAGTACGC
TGTGTACTTCAGGACTGCCACTCCTCACGAGCATACGCTTACAACGATAG
ATGTCGATGCCTTGTAGG
UFO06784.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8944-RB | 4350 | CG8944-RB | 190..1259 | 9..1060 | 4775 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15745320..15746042 | 731..9 | 3615 | 100 | Minus |
| X | 23542271 | X | 15744886..15745169 | 1004..732 | 875 | 95.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:53 has no hits.
UFO06784.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:48 Download gff for
UFO06784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 159..1198 | 1..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:53 Download gff for
UFO06784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 183..1222 | 1..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:16 Download gff for
UFO06784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 183..1222 | 1..1027 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:16 Download gff for
UFO06784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15744860..15745169 | 732..1027 | 94 | <- | Minus |
| X | 15745320..15746046 | 1..731 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:53 Download gff for
UFO06784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15638893..15639202 | 732..1027 | 94 | <- | Minus |
| arm_X | 15639353..15640079 | 1..731 | 99 | | Minus |
