UFO06786.5prime Sequence
1112 bp (1027 high quality bases) assembled on 2009-08-24
> UFO06786.5prime
CAGTCGACATGATATTCCCAAGAGAAAAGAAGGTGTTATGGCGTTATGCG
TCCAGCAACAATCCGAGCAATGGGGTGTCAGCAGCACCGCCCGCTCAGCC
ACCACGGCCGCCTCCCCCTCCACATCGACCCCGCCCTCATCAGTGTACTC
CAAGCTTTGGTTATTCCTGCAACGAAGAGGACTCCTTGGCAATGCGACAG
ACGCCGCTGCCGCCTTACAGTTCGATAGCCTGCGGGATGGACTGCTCCAG
CTCAAACTCCAGCTCCTGTGGCCAGAGTTTGAGTCTGAGTCAGGGGCAAG
GCCACAACAACAACAACAGCCATCCGTACCGCCGTCTGCCAAATCACATG
GATGTGTTGCCGCCGCCTCCGTCAGCGTGCGACCGCTGCTGTACCGCTCC
TGGTTACAGCTGCGCAAGCTCCTGCGACGATATGTTGATCGACGGAAGCG
ATCTGGATCAGGATCGGAGTCCGGATCAGGGACAGGTTCAGCCGGTGGAC
CGCCGGATGATAAGTGCCACCACCTTTACGACCATGTTTCGGAAATGCTG
CGGCGGCGCAACGGAGTCCACCAGCGGATCCACACTTACGATTCCAGTCA
GCACGTCCAGAGCCACCGCTCATCCTCCCCAAACGCAAGCCCAGAATGGC
AAACGATTTCGCGAGGATTTCGAAGCGCTAATGAAGCAACTCAAGCGCAA
GCAGAGAAACGAACTTCTGCTTGCAGTCAAGAGTCGCCTAGATCCGCCGA
CCAAGACGCAGCGCGATGTCGTGGAACCCACCACCACCACCGCACCCACC
TACCTGCAGTGCATCCTGATACCGTGCAAAACGCAAACGGTTTGGGAGCC
GCACGTGACCGCCAGTCGCCTGTTTTCTGGCGGGAATGTGAACGCCAAGG
AACTGAAGCGACTGCCCACTTGTCCCGCGCCGCGACTGCATCTACATGTG
CTGCAATCGCTGCATGTTTCGCATCTGCACAGCCCGAAACAGAATCCCCC
AACACCGCCGTACCAACGCTCAAAAATGCTGAAAACTGAAAGATGCGAAT
TTCGAGAAGACTCGCGAACGATGCAAGGTCGCAGCCCCTCAAGCACTGAT
GCAAAGCACAAG
UFO06786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dad-RC | 3751 | CG5201-RC | 771..1854 | 8..1081 | 5030 | 98.3 | Plus |
| Dad-RB | 3550 | CG5201-RB | 570..1653 | 8..1081 | 5030 | 98.3 | Plus |
| Dad-RA | 3767 | CG5201-RA | 787..1870 | 8..1081 | 5030 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17057710..17058665 | 8..958 | 4555 | 99.2 | Plus |
| 3R | 32079331 | 3R | 17064719..17064767 | 997..1046 | 185 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:19 has no hits.
UFO06786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:39 Download gff for
UFO06786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RC | 766..1868 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:23 Download gff for
UFO06786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RA | 782..1884 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:23 Download gff for
UFO06786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RA | 782..1884 | 1..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:23 Download gff for
UFO06786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17057705..17058704 | 1..992 | 98 | -> | Plus |
| 3R | 17064716..17064767 | 993..1046 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:23 Download gff for
UFO06786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12883427..12884426 | 1..992 | 98 | -> | Plus |
| arm_3R | 12890438..12890489 | 993..1046 | 94 | | Plus |
