UFO06787.5prime Sequence
1048 bp (959 high quality bases) assembled on 2009-08-24
> UFO06787.5prime
CAGTCGACATGCCATCGCCGCACGAAAAGGATGCTAACAAAGCGGCAGAA
ACGGCAGCCAAAGAAAATGCCGCCGATAAGGTAAGCGATGTGGAAAATGC
ATCGGTTACTGCGGGGGTGGCGAAAGCCGTGGGGGCACAGCCGGAAAGGG
GCTCCAAAGATGCAGCCGAATCCCCCGCCGCTGTCGACGCCTCTGCCTCT
GCCGCCACTGATGACGTCGCTGATAAAAAAGCCAAAGGAGACTCAACGGC
TGTTTCAAATACCGAATCGGATGCAGCTGCAGCGGACAAAAAGGAGAAAT
CCCCCTCGCCGGTAATAAAGAAGTCCAACAATAAGGATGCTAAAAAGGAG
GACAACTCCGAAAAGGACGAGGAGAACTCGGAAGACGGCGATGAGCCAGA
AGATGAGGCTGATGAGAAAGCTAGCGATGAAGAGAGCGAGAAGAAGAAAC
CGAAATTAGATGCAGAGGACAAGATAAAGGATGCCACTGATGAGTCCAAG
CCAAAATCGGGAGCCGATAAGCCCAAGAAACCTGAGCCCAAGGCCAAGAA
TGGCAAGGTGGCTAAGGAGGAGGACGACGACGAAGAGGACGAGGATGATG
AGGATGCCGAAGATGACGATGGAGACGAGAACGATGGCCTGGACAAGAAC
AACGAGGTGGCCGAGGATGATGAGAATGTCGTCGCTCTCGCCGAGATTGA
TCGCATTAATGAGAATATCAACAAGACTCGTGTAGATGGTCTGCAAACAT
TGCATGCAATCTGCTTTGGCGCCCAAGGCAAGAACAATGTGGTCAAGAAG
AACTTGCGATCCTTTGCCGGGTTTCGAGTTTGCCAAGGATTCAGCGGAGT
ACAACAAAAAGCTGGAGCCATCAAAAAGTGGATATAAGGCTGCGCAGCAT
CTGCGAGATCTTACCCTCGATCGCAAGGCAGCAGACGAGACTGTCTCGAG
TGCTCAAATCTATGACGACGAGTCGCTTGCTGACAGTGATGAGGAGAGAG
AATGCTAGACAGGATCTGATGAAATGAGAGACGCATGAAAGACAGAGC
UFO06787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dek-RB | 2559 | CG5935-RB | 143..1104 | 8..959 | 4535 | 98.8 | Plus |
| Dek-RC | 2579 | CG5935-RC | 92..1036 | 25..959 | 4450 | 98.7 | Plus |
| Dek-RE | 3947 | CG5935-RE | 84..1024 | 29..959 | 4430 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16857631..16858114 | 275..758 | 2420 | 100 | Plus |
| 2R | 25286936 | 2R | 16856784..16857052 | 8..276 | 1345 | 100 | Plus |
| 2R | 25286936 | 2R | 16858181..16858355 | 759..928 | 565 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:49 has no hits.
UFO06787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:38 Download gff for
UFO06787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RB | 156..1152 | 1..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:11 Download gff for
UFO06787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RB | 138..1134 | 1..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:33 Download gff for
UFO06787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RB | 138..1134 | 1..981 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:33 Download gff for
UFO06787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16858181..16858421 | 759..981 | 91 | | Plus |
| 2R | 16856779..16857052 | 1..276 | 98 | -> | Plus |
| 2R | 16857633..16858114 | 277..758 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:11 Download gff for
UFO06787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12744284..12744557 | 1..276 | 98 | -> | Plus |
| arm_2R | 12745138..12745619 | 277..758 | 100 | -> | Plus |
| arm_2R | 12745686..12745926 | 759..981 | 91 | | Plus |
