UFO06789.5prime Sequence
1090 bp (853 high quality bases) assembled on 2009-08-24
> UFO06789.5prime
CAGTCGACATGGCTGCATATGCGCAGTTTGGATACGCTGGCTACCCGACG
GCAAATCAGCTGACTACCGCCAATACCGATAGCCAGAGCGGCCATGGCGG
AGGATCGCCGCTATCCGGCACGAATGAGGCTTCGCTGAGTCCCTCGGGCG
GCTCGACGGCCACCGGCCTGACTGCCGGTCCTCTGAGTCCAGGTGCTGTT
TCCCAGTCGTCGCATCATGCGGGCCACAAGGGTCTCTCCACATCGCCGGC
GGAGGATGTGGTTGGTGGCGATGTGCCCGTTGGCCTTTCATCTGCTGCCC
AGGACTTGCCCAGCCGGGGATCCTGTTGCGAGAACGGCAGACCCATCATC
ACGGATCCCGTATCGGGACAAACCGTGTGCTCCTGCCAGTACGATCCGGC
CCGACTGGCCATCGGTGGCTATTCCCGCATGGCCCTGCCCTCCGGCGGCG
TGGGAGTTGGCGTCTACGGCGGACCGTATCCCTCTAACGAACAGAACCCT
TACCCCAGCATCGGAGTGGACAACTCGGCCTTCTACGCACCTCTGAGCAA
TCCCTACGGCATCAAGGACACCAGTCCCAGCACCGAGATGAGCGCCTGGA
CATCCGCCAGCCTGCAGTCAACCACCGGATACTATTCCTACGATCCCACG
CTGGCGGCCTACGGATACGGACCCAACTATGATCTCGCCGCCAGGCGGAA
GAGCGCCACGCGGGAATCCACGGCCACGTTGAGGGCCTGGCTGAGTGAGC
ACAAGATGAATCCATATCCGACGACGGGTGAGAAGATTATGCTGGCCATC
ATCACCAAGATGACCCTCACCCAGTGTCCACGTGGTTTGCCAATGCACGT
CGTCGGCTGAAAAGGATAACAAGATGACGTGTGAGCCGAAAAAAAGACGG
AGGACGATGATGATGGCATGATGTCCTACTATGAAAAGGAATATGATGCT
GGCGATGGGTGGGAAAATCTCTACAGAATCCTTTCGATCCCGGTCAATCA
ACTGATCCAAATCCAACTGGGCAAGGGGAAAAAAGAACGGTGCACAGTAA
TGGCCGAACAAAAACCTGGGATGCTGTGACCTGGAAGCCA
UFO06789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caup-RA | 4317 | CG10605-RA | 1139..2181 | 9..1053 | 4690 | 97 | Plus |
| ara-RB | 2918 | CG10571-RB | 819..1429 | 318..940 | 860 | 77.1 | Plus |
| ara-RA | 2942 | CG10571-RA | 1215..1453 | 705..940 | 655 | 85.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12616800..12617288 | 57..545 | 2445 | 100 | Plus |
| 3L | 28110227 | 3L | 12618341..12618657 | 664..978 | 1195 | 94.7 | Plus |
| 3L | 28110227 | 3L | 12617590..12617709 | 545..664 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 12594229..12594467 | 705..940 | 580 | 85.8 | Plus |
| 3L | 28110227 | 3L | 12707397..12707596 | 690..887 | 330 | 80 | Plus |
| 3L | 28110227 | 3L | 12610769..12610819 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:44 has no hits.
UFO06789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:38 Download gff for
UFO06789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 634..1671 | 1..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:47 Download gff for
UFO06789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 1129..2166 | 1..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:11 Download gff for
UFO06789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 1129..2166 | 1..1036 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:11 Download gff for
UFO06789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12610759..12610819 | 1..59 | 93 | -> | Plus |
| 3L | 12616803..12617288 | 60..545 | 100 | -> | Plus |
| 3L | 12617591..12617709 | 546..664 | 100 | -> | Plus |
| 3L | 12618342..12618664 | 665..986 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:47 Download gff for
UFO06789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12603859..12603919 | 1..59 | 93 | -> | Plus |
| arm_3L | 12609903..12610388 | 60..545 | 100 | -> | Plus |
| arm_3L | 12610691..12610809 | 546..664 | 100 | -> | Plus |
| arm_3L | 12611442..12611764 | 665..986 | 94 | -> | Plus |
