Clone UFO06790 Report

Search the DGRC for UFO06790

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:67
Well:90
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptfs(1)h-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06790.5prime Sequence

1112 bp (971 high quality bases) assembled on 2009-08-24

> UFO06790.5prime
CAGTCGACATGTCGTCCAGTGAGCCACCGCCTCGTTACGAGCCACCCGTG
GAGCCAGTCAATGGCATTGTACAGCCACCGGTGATTCCACCAGCGGAGCG
GCCCGGCCGCAATACGAACCAATTGCAATATCTGATCAAGACGGTGATGA
AGGTGATATGGAAGCACCACTTCTCGTGGCCCTTTCAACAGCCCGTCGAT
GCCAAGAAGCTCAACCTGCCCGACTACCACAAGATCATCAAACAACCCAT
GGACATGGGTACGATCAAGAAGCGGCTGGAGAACAACTACTATTGGTCCG
CCAAGGAGACCATACAGGACTTCAATACGATGTTCAACAATTGCTATGTC
TACAACAAGCCCGGCGAGGATGTAGTGGTTATGGCCCAGACGCTCGAGAA
GGTCTTCCTGCAGAAGATCGAATCGATGCCTAAGGAGGAGCTTGAACTGG
AGCCGGTCACGGCCAAGGGTGGCAAAAAGAAGCAACGGGCGCCGGCTACG
CCCAAGTCATCGTCGGGTGGCGCTGGAGCATCCACCGGTTCTGGTACATC
CTCGGCAGCAGTTACCAGCGGACCAGGTAGTGGCTCCACCAAGGTGTCAG
TCGCTGCCTCATCCGCACAACAGTCCGGCCTGCAAGGAGCGACGGGAGCA
GGCGGTGGATCTTCAAGTACACCGGGAACTCAGCCGGGTTCCGGTGCGGG
AGGAGCGATCGCCGCCCGACCCGTATCCGCCATGGGCGGCACGGTTTCAT
CGACGGCCGGCGGTGCACCGTCCATACCACCGATTAGCACAATGCCACCG
CACACGGTACCCGGCAGCACATACGACGACGACAGCGATGGCTGGCGGCG
TGGGGGCAGTGCAGCTGGAGCATCCCATGCTGCCGCCTGATGCTAGTCTC
TGATGCGGCCAACGGCGCTATCCCGTGCGCCGCAGACGCGTCATACTCCC
CCTCTAGATGCATACAGCCGCATACGCGCAGCAGCACGCTGCGCGCGCGC
GCGCAGAGTGCACGGACGCTGAGACAGACAATACACATGCGTCATGCCTA
GCGTCAGCTATGATGGGCTGACGTCGATGACCCGTCCCCTCCACCGCAAT
AAAGGTCACGAG

UFO06790.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
fs(1)h-RI 8716 CG2252-RI 657..1598 8..931 4280 98.1 Plus
fs(1)h-RH 9076 CG2252-RH 1047..1988 8..931 4280 98.1 Plus
fs(1)h-RG 9949 CG2252-RG 637..1578 8..931 4280 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8054583..8055428 851..8 4165 99.8 Minus
Blast to na_te.dros performed 2014-11-28 23:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 1335..1381 138..184 118 72.3 Plus

UFO06790.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:36 Download gff for UFO06790.5prime
Subject Subject Range Query Range Percent Splice Strand
fs(1)h-RC 984..1859 1..871 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:11 Download gff for UFO06790.5prime
Subject Subject Range Query Range Percent Splice Strand
fs(1)h-RG 631..1506 1..871 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:15 Download gff for UFO06790.5prime
Subject Subject Range Query Range Percent Splice Strand
fs(1)h-RG 631..1506 1..871 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:15 Download gff for UFO06790.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8054559..8055431 1..871 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:11 Download gff for UFO06790.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7948592..7949464 1..871 98   Minus