UFO06790.5prime Sequence
1112 bp (971 high quality bases) assembled on 2009-08-24
> UFO06790.5prime
CAGTCGACATGTCGTCCAGTGAGCCACCGCCTCGTTACGAGCCACCCGTG
GAGCCAGTCAATGGCATTGTACAGCCACCGGTGATTCCACCAGCGGAGCG
GCCCGGCCGCAATACGAACCAATTGCAATATCTGATCAAGACGGTGATGA
AGGTGATATGGAAGCACCACTTCTCGTGGCCCTTTCAACAGCCCGTCGAT
GCCAAGAAGCTCAACCTGCCCGACTACCACAAGATCATCAAACAACCCAT
GGACATGGGTACGATCAAGAAGCGGCTGGAGAACAACTACTATTGGTCCG
CCAAGGAGACCATACAGGACTTCAATACGATGTTCAACAATTGCTATGTC
TACAACAAGCCCGGCGAGGATGTAGTGGTTATGGCCCAGACGCTCGAGAA
GGTCTTCCTGCAGAAGATCGAATCGATGCCTAAGGAGGAGCTTGAACTGG
AGCCGGTCACGGCCAAGGGTGGCAAAAAGAAGCAACGGGCGCCGGCTACG
CCCAAGTCATCGTCGGGTGGCGCTGGAGCATCCACCGGTTCTGGTACATC
CTCGGCAGCAGTTACCAGCGGACCAGGTAGTGGCTCCACCAAGGTGTCAG
TCGCTGCCTCATCCGCACAACAGTCCGGCCTGCAAGGAGCGACGGGAGCA
GGCGGTGGATCTTCAAGTACACCGGGAACTCAGCCGGGTTCCGGTGCGGG
AGGAGCGATCGCCGCCCGACCCGTATCCGCCATGGGCGGCACGGTTTCAT
CGACGGCCGGCGGTGCACCGTCCATACCACCGATTAGCACAATGCCACCG
CACACGGTACCCGGCAGCACATACGACGACGACAGCGATGGCTGGCGGCG
TGGGGGCAGTGCAGCTGGAGCATCCCATGCTGCCGCCTGATGCTAGTCTC
TGATGCGGCCAACGGCGCTATCCCGTGCGCCGCAGACGCGTCATACTCCC
CCTCTAGATGCATACAGCCGCATACGCGCAGCAGCACGCTGCGCGCGCGC
GCGCAGAGTGCACGGACGCTGAGACAGACAATACACATGCGTCATGCCTA
GCGTCAGCTATGATGGGCTGACGTCGATGACCCGTCCCCTCCACCGCAAT
AAAGGTCACGAG
UFO06790.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fs(1)h-RI | 8716 | CG2252-RI | 657..1598 | 8..931 | 4280 | 98.1 | Plus |
fs(1)h-RH | 9076 | CG2252-RH | 1047..1988 | 8..931 | 4280 | 98.1 | Plus |
fs(1)h-RG | 9949 | CG2252-RG | 637..1578 | 8..931 | 4280 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8054583..8055428 | 851..8 | 4165 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-28 23:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1335..1381 | 138..184 | 118 | 72.3 | Plus |
UFO06790.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:36 Download gff for
UFO06790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fs(1)h-RC | 984..1859 | 1..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:11 Download gff for
UFO06790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fs(1)h-RG | 631..1506 | 1..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:15 Download gff for
UFO06790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fs(1)h-RG | 631..1506 | 1..871 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:15 Download gff for
UFO06790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8054559..8055431 | 1..871 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:11 Download gff for
UFO06790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7948592..7949464 | 1..871 | 98 | | Minus |