Clone UFO06801 Report

Search the DGRC for UFO06801

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:68
Well:1
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptLSm1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06801.5prime Sequence

154 bp (154 high quality bases) assembled on 2009-08-31

> UFO06801.5prime
CAGTCGACATGGACGACTTAAATCCGCTGGCGGGCACTGCTCACCTCCTG
GAAGAGGTTGACAAGAAACTGATGGTACTTTTGAGAGACGGACGGACTCT
GATTGGATACCTGCGGTCCGTGGACCAGTTCGCCAACCTGGTGCTGCAAC
GCAC

UFO06801.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
LSm1-RA 588 CG4279-RA 78..224 8..154 720 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21170395..21170485 154..64 455 100 Minus
2R 25286936 2R 21170540..21170595 63..8 265 98.2 Minus
Blast to na_te.dros performed on 2014-11-28 22:41:59 has no hits.

UFO06801.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:03 Download gff for UFO06801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4279-RA 46..197 1..154 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:03 Download gff for UFO06801.5prime
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 73..224 1..154 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:14 Download gff for UFO06801.5prime
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 73..224 1..154 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:14 Download gff for UFO06801.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21170395..21170485 64..154 100 <- Minus
2R 21170540..21170600 1..63 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:03 Download gff for UFO06801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17057900..17057990 64..154 100 <- Minus
arm_2R 17058045..17058105 1..63 93   Minus