UFO06802.5prime Sequence
1110 bp (1004 high quality bases) assembled on 2009-08-31
> UFO06802.5prime
CAGTCGACATGTCCCTCAATTGCCCGGTTCATAATAAGAACTCCAGTGGC
TTAAACATTACCAGGTCCGCAACCTCGGATGACGTCAAGATCGCCATGTG
CGCCTGCTTGGAATTGGCCAACTGTCGGGCCGAAAACTGTCAGCTGAAGA
AGAAACTGACCGAATATGAGGCCAAGATCTGCAGTCTCGAACAACTGGTG
GCCACCATTGCGGAGGAGCAGAACCAGATTCGCCAAGAAGTGATCGAGTT
GCGCAATGAGACTCAGGGTGCAACGATGGAAGCCGCCAACGAGGTGGATC
CTTTGGACAACTCATTCGTGAACCCGCAAGAGGAAATGGACGATGAGGAA
GGATACGATCCGGATTCAGAATCCGAGTACAATGCTATCCAGTCCCCCAA
TCCCTCAATACATTCTTCGATGGTCTCGCTGGTTCGCTCATTGAGTTTTT
CATCCACCAGCTCAGATTCTGATTGCATTGTATACAGCGATAATGAGGAT
TTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAGTTGTCCATATTGCCACGTTTAAATCAAAACTGGTGAACTCACCCAGG
ATGACTGAGACGAAAACATATCTCATAACCCTTTAGGAAATAGCAGTTTC
ACGTACACGCCACATCTGCGAATATATGTGTAGAACTGCGAAATCGTCTG
CATTCACTCCAGAGGATGAAACGGTCAGTGGCTCATGAACGGTTACAGGT
GAACTATTCT
UFO06802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14384-RB | 1213 | CG14384-RB | 625..1119 | 9..503 | 2475 | 100 | Plus |
| CG14384-RA | 707 | CG14384-RA | 119..613 | 9..503 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12966032..12966480 | 503..55 | 2230 | 99.8 | Minus |
| 3R | 32079331 | 3R | 12966553..12966602 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:31 has no hits.
UFO06802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:59 Download gff for
UFO06802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 113..617 | 1..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:59 Download gff for
UFO06802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 113..617 | 1..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:31 Download gff for
UFO06802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 113..617 | 1..508 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:31 Download gff for
UFO06802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12966032..12966476 | 59..503 | 100 | <- | Minus |
| 3R | 12966553..12966608 | 1..58 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:59 Download gff for
UFO06802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8791754..8792198 | 59..503 | 100 | <- | Minus |
| arm_3R | 8792275..8792330 | 1..58 | 93 | | Minus |
