UFO06804.5prime Sequence
1079 bp (989 high quality bases) assembled on 2009-08-31
> UFO06804.5prime
CAGTCGACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGGACCGGTTGT
AGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAGTGATGGAAA
GTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCGCCTTCGATC
TCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAGAAACTGGGT
GACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAACTCCTACAA
GGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGCTCAGTGTTT
TGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCTACTGTGTC
ACTGAAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTGTCATGGACG
CACACCCATTGCGCTTGAGAATGGCAAGATCGATCCATATGCCGTTCCCA
AGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAGATGACCACG
GAGCGCATCGTGGAGCGCATCATCTCGCACCGACTGGAATATGAGCGTCG
CAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGGCACTTCAAC
GCCAAAAACAGACCCAAAAGGCCGGCGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGCAGCCATCACAAACGGCATGATGAGCT
GATCGCAGCGCATCAGCACTGTCGCTGCGTATAATATTTGCCATGTGAAA
CCGGGGGCGAGAGTGTCATATTGCACGTTTATCAACTGTGAACTACCAGA
ATGCTGAACGAAAACATTTCTCAATACCG
UFO06804.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RD | 2174 | CG5547-RD | 952..1571 | 7..626 | 3100 | 100 | Plus |
| Pect-RB | 2210 | CG5547-RB | 988..1607 | 7..626 | 3100 | 100 | Plus |
| Pect-RC | 2153 | CG5547-RC | 940..1550 | 16..626 | 3055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13209909..13210225 | 310..626 | 1585 | 100 | Plus |
| 2L | 23513712 | 2L | 13209660..13209845 | 126..311 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 13209481..13209601 | 7..127 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:00 has no hits.
UFO06804.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:46 Download gff for
UFO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RA | 210..839 | 1..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:57 Download gff for
UFO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 982..1611 | 1..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:50 Download gff for
UFO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 982..1611 | 1..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:50 Download gff for
UFO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13209475..13209599 | 1..125 | 97 | -> | Plus |
| 2L | 13209660..13209845 | 126..311 | 100 | -> | Plus |
| 2L | 13209911..13210229 | 312..632 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:57 Download gff for
UFO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13209475..13209599 | 1..125 | 97 | -> | Plus |
| arm_2L | 13209660..13209845 | 126..311 | 100 | -> | Plus |
| arm_2L | 13209911..13210229 | 312..632 | 99 | == | Plus |
