UFO06805.5prime Sequence
1119 bp (1028 high quality bases) assembled on 2009-08-31
> UFO06805.5prime
CAGTCGACATGGATTTCCTAAAGCCCTTCCAGGGACCGGGCAGGAACTCC
GCGAATGGCAATGGAAAATCCAACGACGAGGACGACACAGAGTGTGATTT
TGGCTACCAAGTTTTGGCCAAGGCGGCCAGCAATGGAGGCGAGGATGAGC
TGAAGATAACCATTGCCACTGCATCGGCTGGTTGCTCATCCATGGGGACG
CACACGGTTAATACCTATACTACCGCTTTAAGCAGTACTTCGGCGTCCGG
CATAACATCAAGTTTGGGCGCGACCACGCCCCCGAATATGATCTCTCCAG
GCAGCAATTTGGGCGGAACAGGAGGAGGTTCTGGGTCCGTGGGACCGCAA
ATCCACAACAGCAATAGCAACGGCAGTGCAACCGGAAGTCTAAACTGTGC
TGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCACCAGTGGCAGTA
ATTCCGCCGTAGTCTTGCCCCTGCCCATCTCACCCGCATCCTCAGTCGCT
GCCGCAGCTGCTGCTGTCAGCAAGGCCAATGCAAATGCCCTGGCCTCTCT
GGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACTGGCCCAGCAGA
TGTTCCCGCTAGCCACGCTCAAGGCGGCGGCAGTGGCTGCTGGTCTTCCC
CTGCCACCTACGATCACGCCGCCTGGTTGCAGCACCGGCAGCGCAACCAA
CAGCAATGTCGGTTGTCTGATCATCGAGCCGCATCTCTTTGCGGCGGCGG
ACAACTTCAAGAAGGAACTGACAGCGGCTGCGGCAGCTGGAGCACCTTTG
GGATTGTTCCAGACCCTGGCCCAACCAAGTGCAGAACGCCAATCGTTTGA
ACGGCAGCTGCCCGAGCTTACCCATGGGTAATCCCACTCCTCCGCCGCCG
CCGCCAGCGCCACCAGCCTCCAAGGGGCGAAGGGTACAACCTTCGCGCAA
ACACGGCATCAACCTAAGTTGCTCCGGAGGGAATTCCGTACAAACGCAGC
AGCAGCAGTCATGCAATGCCACAAATCAACAGCAACAACAGCGTCGCGCA
ACCCGTAGATTGCGATCCGCGTTCGAGCGATTGGACGTTCTGCATGCTAA
GCACAGAAACTTGAACTAA
UFO06805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13204-RB | 1797 | CG13204-RB | 230..1334 | 7..1093 | 5035 | 97.9 | Plus |
| CG13204-RA | 2074 | CG13204-RA | 507..1611 | 7..1093 | 5035 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11368755..11369760 | 42..1042 | 4655 | 99.1 | Plus |
| 2R | 25286936 | 2R | 11368662..11368699 | 7..44 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:40:58 has no hits.
UFO06805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:38 Download gff for
UFO06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13204-RB | 231..1341 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:42 Download gff for
UFO06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13204-RA | 501..1611 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:40 Download gff for
UFO06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13204-RA | 501..1611 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:40 Download gff for
UFO06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11368656..11368698 | 1..43 | 95 | -> | Plus |
| 2R | 11368757..11369824 | 44..1093 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:42 Download gff for
UFO06805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7256161..7256203 | 1..43 | 95 | -> | Plus |
| arm_2R | 7256262..7257329 | 44..1093 | 97 | | Plus |
