UFO06809.5prime Sequence
1087 bp (978 high quality bases) assembled on 2009-08-31
> UFO06809.5prime
CAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGCGCAGTCCC
AACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCATCGCCCGA
GCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCATCCCGACA
AGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGTTAAAGGAG
GCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTACGACAAGTG
GCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGGCATGAAGG
AGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAGTGGATAAA
GAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATGCTGCCCGA
GACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGGATGCAGCA
GCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACCGGCGGGCCTCG
GAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAGTGGGGCGG
CGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGATCGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGCATGATGACCTGAATCGCAGCGCATCAGCACTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAACGGGGCTAGAGTTGTCATATTTGCCA
CGTTCAATTCAACTGTGAAACTCACCCAAGGATTGCTGAAACGAAAACAT
ATTCTCATAGCCTTTAGGAATGGCAGTTTCACCCGTA
UFO06809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jdp-RA | 1960 | CG2239-RA | 101..685 | 9..593 | 2925 | 100 | Plus |
| jdp-RC | 663 | CG2239-RC | 101..445 | 9..353 | 1725 | 100 | Plus |
| jdp-RB | 1921 | CG2239-RB | 101..406 | 9..314 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30518334..30518575 | 593..352 | 1210 | 100 | Minus |
| 3R | 32079331 | 3R | 30519608..30519765 | 353..196 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 30523227..30523330 | 198..95 | 520 | 100 | Minus |
| 3R | 32079331 | 3R | 30526243..30526329 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:44 has no hits.
UFO06809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:42 Download gff for
UFO06809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RA | 95..691 | 1..598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:52 Download gff for
UFO06809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RA | 93..689 | 1..598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:53 Download gff for
UFO06809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RA | 93..689 | 1..598 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:53 Download gff for
UFO06809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30519608..30519763 | 198..353 | 100 | <- | Minus |
| 3R | 30523228..30523329 | 96..197 | 100 | <- | Minus |
| 3R | 30526243..30526333 | 1..95 | 95 | | Minus |
| 3R | 30518330..30518573 | 354..598 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:52 Download gff for
UFO06809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26348950..26349051 | 96..197 | 100 | <- | Minus |
| arm_3R | 26351965..26352055 | 1..95 | 95 | | Minus |
| arm_3R | 26344052..26344295 | 354..598 | 99 | <- | Minus |
| arm_3R | 26345330..26345485 | 198..353 | 100 | <- | Minus |
