UFO06812.5prime Sequence
1049 bp (967 high quality bases) assembled on 2009-08-31
> UFO06812.5prime
CAGTCGACATGTATATATTTCCACCATATACCCTGCTCCTTATCATCCTC
CGCATTGTGAGTGTCCGTGCGATGAGCTTCGACCAGCCCCACAACGAACA
CGACGCCTCCCTGGCTAGCTATTTGGACAACACCAACGATGACATATCTC
CCCAGGGCTTCAACGGCGATGGGAATGGTAGTTCGGGGGCCACAGTGGTG
CCATTCCCTTATCTGGGATGCACCACAAGACCGTCCTACCAATCTGGATG
TGAAAGCATGGACGAAAGCGCTAGGGACCGAGAAAAAGATCGCAATATTG
ATCGGGATCGAGGCCGAGATTGGGATCGAAATAGGGGTTGCGATAGAAAC
AGGGATCGGGACAAAGACAGGAATAATATTAGAGATAGGGACAACTGTGA
CTCCTGTGACGAGATTATCAATTCGCGGCTGAAGGCCACCCACATTGCCC
AGAATGCCGCCCAGGTGGCCAAGGCAGCCAATGATGCACAGGCGGCCGCC
GCTCAAGATGCATCGCGGCAGGCGAAGATGCAGCTGGCGGAAAAGGCCAT
CTCCGCTGCCCGTGCCGCCGATGCGGTGCTCGAGGGCAAACAGGCAATGG
TGGACAACTACGCTAGGGAGATCCGGGATGCCGAGGAGGTGGTCGGACAG
GTGAGCTGCTCGCTGCAGAACAGTGAGACGAACGTGGAGGCCTCCTGTGC
CGTGGTCAAAGCAGCGGAGGTTCAAGCCGAAACATTCAGGGCCCTCGTAC
AGCAGACGAGTGGCATTTTGTCGGAAATGGACAGCCTAATCGACCAGTCG
AACATGGATATCGAGGAGAAGAACCCAATGCTGGCGGCGGCGAAAGGCAC
GTGGTGACCGCCTGGCCGCCAGGTGGCGCAAGCTAAGTCGGAGTACGAGC
AGGTGAAGAGGCGGCCTGTCGCCGCCGCATCCGCGCCGTGAGCCAAGCAA
AAAGTCGGCACGGCAGTTTGCTGTACAGTCGTCGTCACGCTACCCACTGT
CGCATAAGGTCAATGAGCGCGCATACGCACTCGAAGACACCTGCATGCT
UFO06812.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12985-RA | 1357 | CG12985-RA | 28..1081 | 9..1045 | 4725 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17883745..17884476 | 9..740 | 3660 | 100 | Plus |
| X | 23542271 | X | 17884635..17884881 | 735..977 | 835 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:20 has no hits.
UFO06812.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:03 Download gff for
UFO06812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-RA | 20..1053 | 1..1022 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:24 Download gff for
UFO06812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-RA | 20..1053 | 1..1022 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:02 Download gff for
UFO06812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-RA | 20..1053 | 1..1022 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:02 Download gff for
UFO06812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17883737..17884475 | 1..739 | 99 | -> | Plus |
| X | 17884640..17884934 | 740..1022 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:24 Download gff for
UFO06812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17777770..17778508 | 1..739 | 99 | -> | Plus |
| arm_X | 17778673..17778967 | 740..1022 | 93 | | Plus |
