UFO06814.5prime Sequence
1125 bp (1006 high quality bases) assembled on 2009-08-31
> UFO06814.5prime
CAGTCGACATGGAAGGCAAAAATATTGAATATAATGCGGACGAACTTCAG
GCGCCAGCTTGGCTAAATGCTCAGTTTATCGGTGATATTCTGAGAGAGTA
CGAGCAACTCCCGGATCTTAAAGTAACCGATCTGCAGGTATCACCCGCCA
CTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGCACCAAAGTGGAG
TACACAACACCTAAGGGAAAGTTCTTCAAGCCACTGATCATCAAAACTAT
GCCAGAGCAGGAAGGACATAAAAAGGACATGCTGTCCGAATCGCATTTAT
TCGAAACGGAAATCGGAATGTACTGCCATGCCCTTCCAGAGTTCGAAAGG
ATCCTCCGAGAAGCAGGGGACAATACCAAACTGTTTGTGCCCTGCATTTA
TCACAGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCTGGTTCCGC
AGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGGATTTGAAA
TTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATGAAAGTCAT
CAATGAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTTATTCGAAA
TGCCCACAATCGATACTGATCCTTTTATAACAACAGGCATGACAAACTTT
ATTGAAATGCTGGACAAAATGCCGGAACTAAGAAAGTATAAACATCATTT
TGAAAAGATTAAAGATAATTACATGCAACGCCTAGAGGTTGAGATGCATG
AATATCACAAATATCGGCGAAACGATCGGTACTACGTCCTGTGTCACGGT
GACTTCCATCTTCGCAATATGATGTTTAGACACAATAAGGAGTTGGGAGC
CTACGATGACGTGATGTTAGTCGACTTTCAATTGAGCAATCTGTGCCCCA
TTACAGTGACTTGACATACTCGTATATATGCTGATGGAGCCGGACAGCGC
TGGAAATGGGAGAGACTGATCATGAATATTTTTTCGTTTGTAGCCACCCT
CAGAAATGATACAGGGAAATGCTACCCAAGAGAATTGTGGGGAGCAATAC
AAAATAACAGATATGATTCTTCGATAAGACCTTCTTCTAATATTGGTGGG
CGTAATTCATGATTGGATGCCGTGA
UFO06814.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31104-RA | 1382 | CG31104-RA | 61..1181 | 9..1103 | 4870 | 97 | Plus |
| CG31300-RA | 1474 | CG31300-RA | 108..1034 | 39..961 | 1250 | 76.3 | Plus |
| CG13658-RB | 1334 | CG13658-RB | 165..603 | 156..594 | 605 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25285533..25286081 | 9..557 | 2745 | 100 | Plus |
| 3R | 32079331 | 3R | 25286135..25286548 | 556..965 | 1870 | 99 | Plus |
| 3R | 32079331 | 3R | 25283727..25284142 | 39..454 | 685 | 77.6 | Plus |
| 3R | 32079331 | 3R | 25287638..25287955 | 156..473 | 555 | 78.3 | Plus |
| 3R | 32079331 | 3R | 25284305..25284605 | 556..856 | 545 | 78.7 | Plus |
| 3R | 32079331 | 3R | 25289952..25290750 | 28..826 | 440 | 70.3 | Plus |
| 3R | 32079331 | 3R | 25304368..25304655 | 157..444 | 270 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:02:26 has no hits.
UFO06814.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:02 Download gff for
UFO06814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31104-RA | 61..1145 | 9..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:26 Download gff for
UFO06814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31104-RA | 61..1145 | 9..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:38 Download gff for
UFO06814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31104-RA | 61..1145 | 9..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:38 Download gff for
UFO06814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25285533..25286081 | 9..557 | 100 | -> | Plus |
| 3R | 25286137..25286664 | 558..1067 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:26 Download gff for
UFO06814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21111255..21111803 | 9..557 | 100 | -> | Plus |
| arm_3R | 21111859..21112386 | 558..1067 | 95 | | Plus |
