Clone UFO06818 Report

Search the DGRC for UFO06818

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:68
Well:18
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptParp-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06818.5prime Sequence

391 bp (391 high quality bases) assembled on 2009-08-31

> UFO06818.5prime
CAGTCGACATGGATATTGAATTACCTTATCTTGCTGAGTATGCAAGAACT
GGACGAGCCACTTGCAAAGGATGTAAAAGTACTATATCTAAAGATACTCT
TCGGATTGCTGTCATGGTTCAATCTGCATTTCATGATGCCAAAGTTCCGA
ATTGGTTTCATAAAACCTGCTTTTTTAAAAACCAGCGTCCCAGCTCAGTA
GGAGACATACAAAACATTGGAAATCTCCGATTTGCCGATCAAAAGGAATT
AACGGATCTTGTGGAAAATATACAAGAAGTTATAAGCGCACAATTAGGAA
AAAAGCGATCGAAGGCTTTTAACTTAGCATTAAAAGACTTTGGGATTGAA
TATGCAAAATCTAGTCGATCGACGTGTCGTGGATGTGAACA

UFO06818.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Parp-RB 3112 CG40411-RB 76..458 9..391 1915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 3585369..3585510 264..123 710 100 Minus
3R 32079331 3R 3585187..3585314 391..264 640 100 Minus
3R 32079331 3R 3586866..3586979 122..9 570 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:52:37 has no hits.

UFO06818.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:00 Download gff for UFO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
Parp-RA 496..882 3..390 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:04 Download gff for UFO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
Parp-RB 72..458 3..390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:35 Download gff for UFO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
Parp-RB 71..457 3..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:35 Download gff for UFO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 3585188..3585313 265..390 100 <- Minus
3R 3585369..3585510 123..264 100 <- Minus
3R 3586866..3586984 3..122 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:04 Download gff for UFO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
3RHet 1936750..1936891 123..264 100 -> Plus
3RHet 1935276..1935394 3..122 97 -> Plus
3RHet 1936947..1937072 265..390 100   Plus