UFO06824.5prime Sequence
1102 bp (1030 high quality bases) assembled on 2009-08-31
> UFO06824.5prime
CAGCGACATGTCTTCGCCGGCGGCGCAGAGCAACAGCAGCAGCAGCCAGT
CGCAGTCCGCAGCCCAGCAGCAGCAGCAGCAGAATCAAAAGGCCAATGTC
AACAACACACACGACAACAAGAATGCCGCGGCGACGACGGGGACAGCGGC
GGGATCGGGATCAGGCGGAGCGGCAGGCTCGGCGGGCACACAGCAGCAGG
GTCAGGGCGGCACTGGAACCTCGAGCGGTCCATCCAGCCCAACCAAGCGC
AGCACAATATCGACAAAGGAGCGTGTGATCGACAGCGTGGCATTTCCGCC
GAGCCGTAAACTCACCTGCGCGGATGTGTTCGACGCGCGGACCGGAAAGC
CGCAGCACGATGTCCTCAAGCAGCACTTCATCCTGGAGGGCAGGATCGAG
GAGAGCGCCGCCCTGCGCATTATCCAAGAGGGCGCCACGCTATTGCGCAC
GGAAAAGACGATGATCGACATCGAGGCGCCGGTGACGGTGTGCGGCGATA
TCCATGGCCAGTTCTACGATCTGATGAAGCTATTCGAGATTGGGGGCTCG
CCGGCGACCACCAAGTATCTGTTCCTGGGCGACTACGTCGATCGGGGCTA
CTTCAGCATCGAGTGCGTACTGTATTTGTGGTCGCTAAAGATCACCTATC
CGCAGACGCTGTTCCTGCTGCGCGGCAACCACGAGTGCCGGCACTTAACC
GAGTACTTCACCTTCAAGCAGGAGTGCAAGATCAAGTACTCGGAGCGCGT
GTACGACGCCTGCATGGACGCATTCGACTGCCTGCCGCTGGCGGCGCTCA
TGAACCAGCAGTTCCTCTGCGTGCACGGCGGTCTGTCGCCGGAGATACAC
GAGCTGGAGGACATCCGACGGCTCGACCGCTTCAAGGAGCCTCCCGCCTT
TGGCCCCATGTGCGACCTGCTGTGGTCCGATCCGCTGGAGGACTTCGGCA
ACGAGAAGAACTCGGACTTCTACACGCACAACTCCGTGCGCGGCTGCTCG
TACCTCTACAGCTACGCGCCTGCTGCGACTTCTGCAGACACACTGCCTGT
CGATCATGGACCCCGAGGCGCAAGACGCGCTACCGCATGTACGCAAGCCG
AA
UFO06824.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA-14F-RD | 4007 | CG9819-RD | 291..1386 | 7..1092 | 5155 | 98.5 | Plus |
| CanA-14F-RC | 7965 | CG9819-RC | 618..1713 | 7..1092 | 5155 | 98.5 | Plus |
| CanA-14F-RB | 6837 | CG9819-RB | 483..1578 | 7..1092 | 5155 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16567005..16568031 | 1032..7 | 5070 | 99.8 | Minus |
| X | 23542271 | X | 16558406..16559173 | 1032..266 | 2740 | 90.8 | Minus |
| 3R | 32079331 | 3R | 31042487..31042624 | 878..1015 | 360 | 84.1 | Plus |
| 3R | 32079331 | 3R | 31042283..31042398 | 731..846 | 310 | 84.5 | Plus |
| 3R | 32079331 | 3R | 31041633..31041875 | 371..613 | 300 | 74.9 | Plus |
| 3R | 32079331 | 3R | 31041962..31042080 | 612..730 | 205 | 78.2 | Plus |
| 3R | 32079331 | 3R | 12425404..12425529 | 598..473 | 195 | 77 | Minus |
| 2L | 23513712 | 2L | 7830510..7830633 | 479..602 | 185 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:34:59 has no hits.
UFO06824.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:57 Download gff for
UFO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 479..1586 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:09 Download gff for
UFO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 479..1583 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:54 Download gff for
UFO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 479..1583 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:54 Download gff for
UFO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16566990..16568035 | 1..1042 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:09 Download gff for
UFO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16461023..16462068 | 1..1042 | 99 | | Minus |
