UFO06826.5prime Sequence
1133 bp (1023 high quality bases) assembled on 2009-08-31
> UFO06826.5prime
CAGTCGACATGGGTTCCTCGTCGTCGGGAAAGAAACACAAGAAGGACAAG
AAGAACCGTCATCGCTCGCGATCGTCGGAGCGACCGCGGCGCGTCACAGA
GGACGAGGATGTCACACTGGATCTCACCGACGACTCCTCGTCGCGGCACA
GACACCACAAGCACAAGAAGCACAAGGAGCACCGCCACAAGCACCACAAG
CAAAAGGAGCGCGAGCGCGCGAACGAGGTCATCTCCCTAGAGGAATCGGA
CTCGGATAGTTTCTCCTTTTTTTCAGGTTCCGACTGCGTGGAGGTGCCGG
TACAGGCGCAGGTGCAGGCGCAGGCCAAGTTGAGGGACGCCAGAGAATCG
TCCAATCGTGACAAGGAGCGGGATTCTGGACGCGATCGTGAACTCCTAAG
AGAAAGGGAGCGAGAACGAGATCGTGAGCGGGAGAGGGATCGGGATCGGG
AAAAGGAGCGCGAACGGGAGCGTGAGAAGGAGCGTCTCAGGGAGCGGGAG
GAGCGCGAGAGAGAGCGTGAGAAGGAACGTATCAGAGAACGCGAGAAAGA
ACGCCTTAGGGAGCGCGAGAGGGAGCGGGAACGCGAACGTGTACGGGAGC
TCACAGCTCCTCCACCACCCCAAATCTCCAAGCATGCCGAATATGAGTCT
AGGCGAGAGCGTGAGATCGAACGGGAACGGGACGCCCGCAAGCGATCTGG
CAGAGAACGTGAAAGGGAACGTAATAGGGAACGGTCCCGATCCCAGTCGC
CAGCATCGTCGTCGCGTAAACCAGCCACTAAGGAACGCGAACCATCGTCT
CGTTCCTTCTCGCCAATACCAGAAAACGGAGCCGGCGATGTCCTGTCCAT
TACGGAGACGAACAAACTTCGCGCCAAGCTGGGTCTGAGCCACTCGAAGT
TGATAGTGTCCCAGCAAGGCAGGCCCTCCGCCTGGAAGCAGTAGTCAAGG
CGAGATCAAAAACCCCATGGCGAGGGCCGATCTCTTCCTCGTACAAGGAT
GAGTGGGGGCCGAGTTCTTGCCCAGCGGCCGACATCTAAAGGAGAAAAGG
GAGGCGAGAAGCTGCGCGAGAAACTCAACAGCGCAAGGAGAACGATCTTA
AGAGCGCCTGACTCGCATCCAAAACTTGGGGAG
UFO06826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6686-RA | 3187 | CG6686-RA | 95..1217 | 9..1123 | 5200 | 98.3 | Plus |
| CG6686-RC | 3192 | CG6686-RC | 95..1222 | 9..1123 | 5030 | 97.3 | Plus |
| CG6686-RB | 3169 | CG6686-RB | 95..1199 | 9..1123 | 4920 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11986568..11987394 | 1092..270 | 3580 | 98.2 | Minus |
| 2L | 23513712 | 2L | 11987694..11987945 | 260..9 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:22 has no hits.
UFO06826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:56 Download gff for
UFO06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6686-RA | 91..1214 | 9..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:20 Download gff for
UFO06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6686-RA | 95..1218 | 9..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:06 Download gff for
UFO06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6686-RA | 95..1218 | 9..1125 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:06 Download gff for
UFO06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11987696..11987945 | 9..258 | 100 | | Minus |
| 2L | 11987495..11987512 | 259..276 | 100 | <- | Minus |
| 2L | 11986532..11987387 | 277..1125 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:20 Download gff for
UFO06826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11986532..11987387 | 277..1125 | 97 | <- | Minus |
| arm_2L | 11987495..11987512 | 259..276 | 100 | <- | Minus |
| arm_2L | 11987696..11987945 | 9..258 | 100 | | Minus |
