UFO06827.5prime Sequence
1119 bp (998 high quality bases) assembled on 2009-08-31
> UFO06827.5prime
CAGTCGACATGGCTGCTGTCAATCTCCAGGCTTCGTGCTCCTCCGGGCTC
GCCTCTGAGGATGACGCCAATGTGGGCAGCCAGATAGGCGCGGCGGAGCG
TTTGGAACGACCTCCAAGGCGGCAACAGCAGCGGAACAACTACGGCTCCA
GCAATCAGGATCAACCGGATGCTGCCATACTTGCTGTGCCCAATGTGGTG
ATGCGTGAACCTTGTGGCTCGCGCCCTTCAAGACTGACCGGTGGAGGAGG
CGGCAGTGGTGGTCCGCCCACAAATGAAATGGAGGAAGAGCAGGGCCTGA
AATACGGGGCCCAGCATGTGATCAAGTTATTCGTCCCCGTCTCCCTTTGC
ATGCTGGTAGTGGTGGCTACCATCAACTCCATCAGCTTCTACAACAGCAC
GGATGTCTATCTCCTCTACACACCTTTCCATGAACAATCGCCCGAGCCTA
GTGTTAAGTTCTGGAGTGCCTTGGCGAACTCCCTGATCCTGATGAGCGTG
GTGGTGGTGATGACCTTTTTGCTGATTGTTTTGTACAAGAAGCGTTGCTA
TCGCATCATTCACGGCTGGCTGATTCTCTCCTCCTTCATGTTGTTGTTCA
TTTTTACGTACTTATATTTGGAAGAGCTTCTTCGCGCCTATAACATACCG
ATGGACTACCCTACTGCACTACTGATTATGTGGAACTTTGGAGTGGTCGG
AATGATGTCCATCCATTGGCAGGGACCTCTGCGGTTGCAGCAAGGATATC
TCATTTTCGTGGCAGCCTTGATGGCCTTGGTGTTCATTAAATACCTGCCT
GAATGGACTGCCTGGGCTGTATTGGCTGCCATTTCTATTTGGGATCTTAT
TGCTGTCCTTTCGCCAAGAGGACCCCTCCGCATTCTGGTGGAAACGGCTC
AGAGCGAAATGAGCAAATCTTCCCCGCTCTGATTTATTCATCCACTGTCG
TTTACGCACTTGTAAACACTGTTACGCCGCAGCATCGCAGCACAGCTTCT
TCTCGTCGTCGTCAGCACTCACCACAACACGAGGGCCACGCAGACTCGCT
GCTTCCCGAGCAGCAGCGCTAATGCCACGCCAGTACTCCATCCTCGACGA
TCACGATACGCAGTTACTG
UFO06827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psn-RE | 1891 | CG18803-RE | 159..1232 | 9..1068 | 5000 | 98.5 | Plus |
| Psn-RD | 1879 | CG18803-RD | 189..1262 | 9..1068 | 5000 | 98.5 | Plus |
| Psn-RC | 1778 | CG18803-RC | 145..1218 | 9..1068 | 5000 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20433072..20433310 | 174..412 | 1195 | 100 | Plus |
| 3L | 28110227 | 3L | 20433641..20433861 | 623..843 | 1105 | 100 | Plus |
| 3L | 28110227 | 3L | 20433378..20433587 | 413..622 | 1050 | 100 | Plus |
| 3L | 28110227 | 3L | 20432842..20433007 | 9..174 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 20433933..20434032 | 843..941 | 450 | 99 | Plus |
| 3L | 28110227 | 3L | 20434082..20434129 | 937..984 | 225 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:56:01 has no hits.
UFO06827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:55 Download gff for
UFO06827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psn-RC | 311..1389 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:58 Download gff for
UFO06827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psn-RC | 140..1218 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:02 Download gff for
UFO06827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psn-RC | 140..1218 | 1..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:02 Download gff for
UFO06827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20432837..20433006 | 1..173 | 97 | -> | Plus |
| 3L | 20433072..20433310 | 174..412 | 100 | -> | Plus |
| 3L | 20433378..20433587 | 413..622 | 100 | -> | Plus |
| 3L | 20433641..20433861 | 623..843 | 100 | -> | Plus |
| 3L | 20433934..20434032 | 844..941 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:58 Download gff for
UFO06827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20427034..20427132 | 844..941 | 98 | -> | Plus |
| arm_3L | 20426172..20426410 | 174..412 | 100 | -> | Plus |
| arm_3L | 20426478..20426687 | 413..622 | 100 | -> | Plus |
| arm_3L | 20425937..20426106 | 1..173 | 97 | -> | Plus |
| arm_3L | 20426741..20426961 | 623..843 | 100 | -> | Plus |
