UFO06828.5prime Sequence
1141 bp (1016 high quality bases) assembled on 2009-08-31
> UFO06828.5prime
CAGTCGACATGAACCTCACAGAGCAAAACCCATATGGAAACGGGCTGCTC
TACGCAGCCTTCAATCAAGACCAAGGATGCTTCGCGTGCGCGACGGACAC
CGGATTCCGGGTCTACAACTGTGATCCGCTGAAGGAGAAGGAGCGCCAAT
ACTTTCCAGAGGGTGGTCTCAGCCATGTGGAGATGCTGTTTCGTTGCAAT
TACTTAGCCCTGGTTGGAGGCGGCATCCGGCCGCTGTACCCGCCCAACAA
GGTGATCGTGTGGGATGACCTGAAGAAGTCCCCGGCCATATCGCTGGACT
TCAATCAGCCCGTGCGGGCGGTACGACTGCGTCGGGATCGCATCGTGGTC
GTGTTGGAGGGCGTGATTAAGGTGTTCACCTTCACTCAGCAACCACAGCA
GCTGCACGTCTTTGAGACCAGCTCAAATCCCAACGGGCTGTGTGTGCTGT
GCCCGCACAGCAATAAGAGCCTCCTCGCATTCCCCGGCCGTCGAACTGGC
CACGTTCAAATTGTTGATCTGGCCAACACAGAGCGGGCGCCGCTTGAGGT
GATCGCCCACGAGGCTGGTATCAGCTGTATTGCCCTTAATCTGCAAGGCA
CGCGACTAGCCACCGCCGGGGAAAAGGGCACCCTCATCCGTATCTTCGAT
ACGGAAAGTGGCAAGAAGGTATCAGAGCTGAGGCGCGGAAGCAACCACGC
CAACATATTCTGCATCAACTTTAACCACCAGTCCACAATGGTGGTCGTCG
CCTCCGATCATGGCACCATACACGTCTTCAACCTGGAGGACAACAAGCCC
CGTGAATCCTCGCTGCCCATAATACCCAAGTATTTCTCGAGCCAGTGGAG
TTTTGTCAAGTTTTCAATACCCCAGGGACCTCGATGTGTATGTGCCTTTG
GCGCCGATCCTAATTCGGTGTGGCCATTTGTGCAGACGGCCACTATTATA
AATTCCTATTTAACAATAAAGGCGAGTGCAGTCGAGACATCTGCAACCAA
TCCTTGGAGCTGCAAGACGATGAAGACCGCAGCTTTCTAGAACATTCGTT
TGGCGGCGCGGGCCCAAGTTAGTTGTCTTATTCATATCATAATCATAATC
ATAATTCCCAACTAGGCTAAGGAGATCCTGGTCATGAACTA
UFO06828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11975-RB | 1733 | CG11975-RB | 132..1147 | 9..1023 | 4980 | 99.5 | Plus |
| CG11975-RA | 1360 | CG11975-RA | 132..1147 | 9..1023 | 4980 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8993698..8994455 | 162..919 | 3790 | 100 | Plus |
| 3R | 32079331 | 3R | 8993534..8993624 | 74..164 | 455 | 100 | Plus |
| 3R | 32079331 | 3R | 8994526..8994626 | 923..1023 | 430 | 95 | Plus |
| 3R | 32079331 | 3R | 8993384..8993451 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5793..5840 | 231..278 | 141 | 77.1 | Plus |
UFO06828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:54 Download gff for
UFO06828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11975-RA | 121..1150 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:00 Download gff for
UFO06828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11975-RA | 125..1154 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:42 Download gff for
UFO06828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11975-RA | 125..1154 | 1..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:42 Download gff for
UFO06828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8993377..8993450 | 1..75 | 94 | -> | Plus |
| 3R | 8993536..8993622 | 76..162 | 100 | -> | Plus |
| 3R | 8993699..8994460 | 163..923 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:00 Download gff for
UFO06828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4819099..4819172 | 1..75 | 94 | -> | Plus |
| arm_3R | 4819258..4819344 | 76..162 | 100 | -> | Plus |
| arm_3R | 4819421..4820182 | 163..923 | 99 | -> | Plus |
