UFO06833.5prime Sequence
1093 bp (999 high quality bases) assembled on 2009-08-31
> UFO06833.5prime
CAGTCGACATGGACTACGAACGCTCGCTGCGTGATCGCCGCCAAAACGAC
AACGAGTACCGACAATTCCTCGAGTTCCGCGAAAAGCTGCCCATTGCAGC
GATGCGGTCGGAAATTTTAACCGCAATTAATGACAATCCAGTGGTAATCA
TTCGTGGAAACACAGGGTGCGGAAAGACTACCCAGATTGCCCAATACATT
CTTGATGACTACATCTGCTCCGGCCAGGGCGGGTACGCTAATATTTATGT
GACCCAGCCTCGTCGCATTTCAGCCATTTCTGTGGCCGAGCGCGTAGCTC
GCGAGCGGTGCGAGCAATTGGGCGACACTGTAGGCTACTCGGTGCGATTT
GAGTCTGTGTTTCCACGACCCTACGGCGCAATCCTCTTTTGCACCGTGGG
TGTGTTGCTGCGCAAGCTGGAGGCTGGCTTACGAGGAGTGTCGCATATTA
TTGTGGACGAAATCCACGAGAGAGACGTGAACAGCGACTTTTTGCTGGTC
ATCCTTCGCGACATGGTCGACACATATCCGGACCTGCATGTTATTCTTAT
GTCGGCCACTATTGATACAACGAAATTTTCCAAATATTTTGGCATCTGTC
CCGTATTGGAAGTACCCGGAAGAGCATTTCCCGTGCAGCAATTTTTCTTG
GAGGACATTATTCAGATGACAGACTTTGTGCCTTCGGCGGAGTCGCGCCG
AAAGCGCAAGGAAGTGGAGGACGAGGAGCAATTGCTTTCCGAGGACAAGG
ACGAGGCGGAAATCAACTATAACAAGGTGTGCGAGGACAAGTATTCACAA
AAGACTCGAAATGCTATGGCCATGCTATCCGAATCGGACGTTAGCTTTGA
GCTGCTGGAGGCATTATTGATGCATATTAAGTCAAAAATATTCCCGGTGC
TATCTTAGTATTCCTGCCCGGTTGGAACTGATCTTTGCGCTTATGAAGTT
TCTGCAAATACAAACATTTTGGTGATACATCCCAATACAAATTTGGCGTG
CCCCTCGCAGATTCACGAGACGAGCACGCAAGTTCAGCTGTTCAGAGGCG
TACAAGATTTACTTTCTACACATGCGAGACTTCTTACATGACG
UFO06833.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mle-RC | 4023 | CG11680-RC | 880..1977 | 9..1084 | 4950 | 97.8 | Plus |
| mle-RA | 4062 | CG11680-RA | 1156..2253 | 9..1084 | 4950 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5977987..5978518 | 540..9 | 2660 | 100 | Minus |
| 2R | 25286936 | 2R | 5976976..5977469 | 1026..540 | 2110 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:34:51 has no hits.
UFO06833.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:49 Download gff for
UFO06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RC | 633..1670 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:06 Download gff for
UFO06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RA | 1150..2187 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:53 Download gff for
UFO06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RA | 1150..2187 | 1..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:53 Download gff for
UFO06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5976969..5977468 | 541..1032 | 98 | <- | Minus |
| 2R | 5977987..5978524 | 1..540 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:06 Download gff for
UFO06833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1864474..1864973 | 541..1032 | 98 | <- | Minus |
| arm_2R | 1865492..1866029 | 1..540 | 99 | | Minus |
