UFO06834.5prime Sequence
1097 bp (998 high quality bases) assembled on 2009-08-31
> UFO06834.5prime
CAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATGAGGACGCC
GCCGACCTGCAGTTTCCCAAAGTTGAGCCACTGGGGCCACAGGTTAAGCG
GTTCATCCATGCACATCAGAATGAACACACCAGGAACTCCATGGTTTTGT
ATAATCCGCACACGTTGCACAGGTACTTGGAGGAGATGGAGGAAAAGACG
CGGGACCAGAATAGCAGTGTTCCATCGGCTACAAAGGATGCCAATCGATG
TGCCACATGTCGCTGCAGTCTCACAGAGCCGTACATTAAGTGCTCCGAGT
GCCTCGACACCCTGCTCTGCCTGCAATGTTTCTCACGTGGAAAGGAGGCC
TTTTCTCACCGCAATAACCACGCTTACATCATAGTCCGCGACAACATACA
GGTGTTCGCCGATGAGCCACACTGGACGGCACGGGACGAGCGCATACTGC
TGAAAACACTTCGCACCCACGGCTATGGCAACTGGGAGGCGGTCTCCCAG
GCTCTGGACCAGCGCCACGAACCCGCAGAAGTGCGACGTCACTACCACGA
TTGCTACTTTGGCGGGATATTCGAGCGGCTCCTTAATCTGAAGCATGCGA
GGGACAGCTATGTGCCCGAACGAATGCCGTATGTCTTCAAAATGCGCAGC
TTGGATCCACCACGTCATGACGACATCGCCTCCATGCAGTTCAGACTGAG
CGCAGGCTACCGCTGTGCAAGAGGAGACTTCGATACTCCGTACGACACCT
CAGCAGAGAGTCTGCTATCTATTATGGTGGATCATAGGGGCAGGGATGAC
GACAACGAGGCGTCTGAGAGTGAGTTTGAGCGCGAAGTGACAGAGAATTG
CAACTCGGACTAGTTCGGGCATACAACAATCGCCTCAGAGAGCGCCAGCG
TCGTTACAGATATGAGCAACACGGTCTCATATGCCCATCGCACCGTCAGC
TGGATTCCAAGTACGTGCACGCCTTTGCAGCGATGCAGTGCATGCGTTTC
TGGCTCATGCAAATCTGTCTGACCCATAGTCGATTGCTGTGGAGTCTCTG
CTATTATCGGGAGCTGCTAGCCAGCCTGCCCAAGCTAACGATCGCGG
UFO06834.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-RG | 2158 | CG43663-RG | 108..1215 | 9..1093 | 4830 | 97 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 108..1215 | 9..1093 | 4830 | 97 | Plus |
| Ada2a-RA | 2400 | CG43663-RA | 108..1215 | 9..1093 | 4830 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18254375..18255193 | 888..71 | 3955 | 99.1 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:47 has no hits.
UFO06834.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:48 Download gff for
UFO06834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RC | 76..1197 | 1..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:15 Download gff for
UFO06834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RA | 99..1220 | 1..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:13 Download gff for
UFO06834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RA | 99..1220 | 1..1097 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:13 Download gff for
UFO06834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18254375..18255191 | 73..888 | 99 | <- | Minus |
| 3R | 18255317..18255386 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:15 Download gff for
UFO06834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14080097..14080913 | 73..888 | 99 | <- | Minus |
| arm_3R | 14081039..14081108 | 1..72 | 94 | | Minus |
