UFO06835.5prime Sequence
1105 bp (984 high quality bases) assembled on 2009-08-31
> UFO06835.5prime
CAGTCGACATGGAACCCTCATATGATCACGAACATCCACATCATCTGCTA
ACAAATTACAATTCGAAAAAGTATCCGCACGTCTCGCGCACTCCGGAGTA
CAGTCACTCCACCGGCAGCGATTATCCGGAGCACGGTGGCTATCTGACGG
ATGGACGCCTGATGCACGAGAGCAACAGCGATGCCGGGATCTACCACGTG
CGCCAGGGAAGCGAGCACTCCTCGCCCAGTCTGCACTCGCCAGCCATACA
GAGCTCCGGATACGAGAATGAGCACCTGAACGAGGCGGTTCTGGCCGCGC
ACAGCCACAGTCACTCGCCCATGCCGATGGTGTCCAGTGCCTATGTGGGC
GGAGGAACTGCCTCCGGATCGCTGATTAACAGCAATATTCCTCTGCTCGG
TGGCGGCGGTAATTCCGTACTGAACAAATTTCTATCGCATCCGCACGCTG
GCATGGTGGGCGGTGGAACCGGACAGATGGAGGACTGCACATCGCACTCG
CCAATTGAAGCGGCGTCCATGTGGAGCTACGACTACAAGGGCGACCTGTG
CGCGCCCAATTGTGGCTATCTGGAGCGACACAAGCCGCTGCCCGCCGACC
TTAAGTATCGGCCCGGCGGAACCCAGTCAAAAAGTGCCAAAGAATCGCGC
ATCCGGCGGCCGATGAACGCCTTCATGGTCTGGGCCAAGATCGAGCGCAA
GAGCTGGCCGACGAGAATCCCGATCTGCATAATGCCGACCTCAGCAAGAT
GTTGGGAAAAAAATGGCGATCGCTGACGCCGCAGATCGCAGACCCTACGT
GGAGGAGGCGGAGCGTCTGCGGGGTGATTCACATGACGGAGCATCCGAAC
TACAAGTACCGACCCCGACGACGCAAGCAGTCCAAGCTGCGGGCCATGCA
GCCGGGCGGCAAGGAGCAAACGGAGAGTTCACCCAATCCGGGACACTGGT
GGATCCAAGTCGAATCCCAAGCTGGGCACACCACCGTGGGCAACGGCATC
ATCAGCTTATACACGCCCACGGACGAAAGCACTGCAAATTCACGAACAGA
ATCACGACATCACTCTGGGTGCCTGTACGAGCACGCTGAAGCCAGTACTC
GCCAG
UFO06835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox15-RA | 3651 | CG8404-RA | 1074..2179 | 9..1103 | 4965 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14203357..14204052 | 756..62 | 3430 | 99.9 | Minus |
| 2R | 25286936 | 2R | 14202943..14203220 | 1032..755 | 1020 | 94.3 | Minus |
| 2R | 25286936 | 2R | 14211288..14211340 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:44 has no hits.
UFO06835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:48 Download gff for
UFO06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1070..2178 | 9..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:13 Download gff for
UFO06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1074..2182 | 9..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:12 Download gff for
UFO06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1074..2182 | 9..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:12 Download gff for
UFO06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14202859..14203219 | 756..1105 | 92 | <- | Minus |
| 2R | 14203358..14204052 | 62..755 | 99 | <- | Minus |
| 2R | 14211288..14211340 | 9..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:13 Download gff for
UFO06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10090364..10090724 | 756..1105 | 92 | <- | Minus |
| arm_2R | 10090863..10091557 | 62..755 | 99 | <- | Minus |
| arm_2R | 10098793..10098845 | 9..61 | 100 | | Minus |
