UFO06838.5prime Sequence
1151 bp (1020 high quality bases) assembled on 2009-08-31
> UFO06838.5prime
CAGTCGACATGCCCGATAACAGCAATAAATTTAGCGCCTCCAGCGATGTC
CGCATTCCGGCCTGGATCAATGAGGCCTACTTCAAGCGACTGCTCAAGCG
GGAGTTTCGGGAGTTCCGGCGCATCCTCAACCTCTCGATCATTCCAGCCA
CGCCGCCCGGAGAAACCTATACATCGCTGCTGATGCGCATCGTCATCGAC
ATCGAGTTGAAAGATGGATTCTCACAGCAGAAGTCCTACATAGTAAAGAC
CATGCTGGACGACGCCCAGGGAAATGGTGGATTCGTGAATACCCTCAACA
TTTTTCCAAAGGAGAAGATGATGTACGAAACGATTATACCTAATTTGGAA
CAGCTTTACGAAGAAGCTGGGCTGAGTGTAAAGTTTGCACCAAAGTGCCA
CCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTTCAGGAGGATTTGC
AAACGAAAAAGTACCGAAATATAAATCGCCTCAAGGGCTTCGACATGGCC
CACATGCATCGAGTGCTAGAAAAGCTGGCGGAATTCCATGCAGCAGGTGC
CGTTTGGCGTCAGCGAAAAGGACCGTTTCCCGATGATTTTCAGAGGATTT
ACCTACCCGCCAACTATCAGAAATCGAAATCGTATCAGGCGAGGCTCCAG
AGCTATAAAACTGCAATAGCCAGTTGGGGTCTGGCCGATCACGAACAGTA
TCCCACGGCCGATCAATTTGTGCAATCCTACGCCAGCTGCTTTAACAACA
ATCCGCAGGAGTTTAAAGTTCTAAATCACGGTGATTTTTGGTCCAGCAAC
ATAATGCTAAGCTATACTCAAACTGGTGATATCAACCAGGTGCGTTTCGT
GGACTTCCAACTGTGCAAGTGGGGTAGTCCGGCTCATGATCTTTGGGAAC
TCATCATATGTTCGGCACGGCATAGTATACGAATACAATACTTTGACTAC
TTCATCAGATATACCACACACACCTAGTGCGCTGCCTAAGATCCTAAAAT
ACAGCGAACGAATACCATGCTACGAGCTGCATATTGAGCATGATCAAGTA
TGGATTTGGGCTACTTACCACCTCCACGCCACTTGTGTTTCATTTTGCTG
CACGGAATACGGAGCTGCTGGTGAGCTTACGCGTCCAGGGAAGAAAGAGA
A
UFO06838.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31102-RA | 1744 | CG31102-RA | 293..1428 | 8..1132 | 5215 | 98 | Plus |
| CG31102-RB | 1756 | CG31102-RB | 293..1440 | 8..1132 | 5085 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25294348..25294837 | 701..212 | 2435 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25293912..25294271 | 1057..702 | 1510 | 97.8 | Minus |
| 3R | 32079331 | 3R | 25295097..25295302 | 213..8 | 1030 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:55:58 has no hits.
UFO06838.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:47 Download gff for
UFO06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31102-RA | 283..1409 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:55 Download gff for
UFO06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31102-RA | 287..1413 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:00 Download gff for
UFO06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31102-RA | 287..1413 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:00 Download gff for
UFO06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25293908..25294271 | 702..1059 | 97 | <- | Minus |
| 3R | 25294348..25294835 | 214..701 | 99 | <- | Minus |
| 3R | 25295097..25295308 | 1..213 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:55 Download gff for
UFO06838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21119630..21119993 | 702..1059 | 97 | <- | Minus |
| arm_3R | 21120070..21120557 | 214..701 | 99 | <- | Minus |
| arm_3R | 21120819..21121030 | 1..213 | 99 | | Minus |
