UFO06840.5prime Sequence
1099 bp (985 high quality bases) assembled on 2009-08-31
> UFO06840.5prime
CAGTCGACATGTTTTACGCATTCATAGCACTTGTTTTGGCCATGCTCCAC
CTGTCATTCGCAGTACAGGTGCAAACGGAGCACACCATTGTGGAGGAATG
GAGCTGGCAAGACCATCACAGCAACAGAGACTTGGGAAGCTATAACTACT
ACACAGCTCTAGATTATGATCAAAATTTCGACGGTGATGAGAATTCAAAC
GATAATGAATATGAAGAGGATGATGGCAGGGCTACTGCCGCCGGCTTGGA
CCGGGATGAGGATCCGTGCGAGCGCAGCTGTCCCCGGTACTACCGGCCTG
TCTGCATTCTCCGCAATGGCCGCAATATGACATTTGCCACGCTCTGCGAG
TTCCACAATCAAGTACGTTGTGCCAACGATCTAAGAAGACAAGGTCATGG
CTATGTGGTCCCCATCTTTCAATACCAACATGATGGTGGCTGCGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATCTCATAAACCCTTTAGGAAATAGGCAGTTTTCACG
TACACGCCACATCTGCGAATATATGTGTAGAACTGCGAAATCGTCTGTAT
TCACTCCGAGCGATGAAACGTTCAGTGCTCATGGAACGGTGTACCAGGTG
AAACTATCGATATCACAGCTTACGCTCATGGCATCGAATCCGGATTGAC
UFO06840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13694-RB | 818 | CG13694-RB | 33..467 | 9..443 | 2175 | 100 | Plus |
| CG13694-RA | 1124 | CG13694-RA | 339..773 | 9..443 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 115716..116150 | 443..9 | 2175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:48 has no hits.
UFO06840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:45 Download gff for
UFO06840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13694-RA | 1..405 | 42..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:49 Download gff for
UFO06840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13694-RA | 335..776 | 1..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:40 Download gff for
UFO06840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13694-RA | 335..776 | 1..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:40 Download gff for
UFO06840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 115716..116154 | 1..443 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:49 Download gff for
UFO06840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 115716..116154 | 1..443 | 99 | | Minus |
