UFO06841.5prime Sequence
1083 bp (992 high quality bases) assembled on 2009-08-31
> UFO06841.5prime
CAGTCGACATGCACGCGCTTCAGGAAGGCGCCACCGTGCTGCACCACCAG
CAGCCACCGCCACCCACTTCTGGCGAGGATCACCTGCTCACCGCTGATAG
TTTCTTTTATGCACGCAGCAATCCCATGGAGAACGCGGCCGCAGCAGCCG
CCGCCGCAGCAGCGGGCTTGATTGATCCGCACCACAATCGCGATCTCCAC
CAGGCGCTGGTGGCCTCGATAGCCAATAATAGTGTGGCCGCCATCGGCGG
TGGCCTGACCACAGCGGCAGTCTTGAAGAGTGCCGCTCAGCAGTCCCAGC
AGGCGGTGCAACAGAACCAGAACGCGGTAGTGGTGACACCGGGACTGGAA
CAGCCCAAACAGGAACCAGCCCAACAGGCGGCACTGGCGCTGCTCAAGGA
GAATGTAAACGCCTCCGCCGGAGCGGGACAGAACAACGGTCAGGCGGCCA
TGGGTGGCAGCAACAAGAGCGGCTCCTCTGGCAGATCCACGCCCAGCCTG
AGCGGAGGCAGTGGCTCCGATCCGGCACCCGGCAAACTCTTTGTCGGCGG
TCTCAGCTGGCAGACGTCGTCTGACAAGCTCAAGGAATACTTCAACATGT
TCGGCACCGTCACCGATGTGCTCATCATGAAGGATCCCGTCACCCAGCGC
AGTCGCGGCTTTGGTTTCATCACATTCCAAGAACCCTGCACCGTGGAGAA
GGTTCTCAAGGTGCCCATTCACACACTCGATGGCAAGAAGATCGATCCCA
AGCATGCCACCCCAAAGAATCGACCTCGTCAGGCCAACAAGACCAAGAAG
ATCTTCGTGGGCGGCGTCTCACAGGATACTTCGGCCGAGGAGGTTAAGGC
TTACTTCAGCCAGTTCGGACCCGTCGAGGAGACGGTTATGTTGATGGACC
AGCAGACAAAGCGCCACCGTGCTTCGGATTTGTCACCTTTGAGATGAGAT
GTGTCGATCGCGTATGTGAGATCCACTTCCACACCATCAGACAGAGTCGA
GTGCAAGAAGCACAGCCAAGAGCAGTCCACACCGGCTGCTCAGCTTCTCA
GACGCATTATGTTGGCACCCTCGGCGTCAGCTG
UFO06841.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-RA | 3984 | CG5099-RA | 490..1581 | 9..1083 | 5005 | 98.2 | Plus |
| msi-RD | 2801 | CG5099-RD | 700..1683 | 117..1083 | 4465 | 98 | Plus |
| msi-RF | 10175 | CG5099-RF | 788..1770 | 118..1083 | 4460 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25594964..25595602 | 9..647 | 3195 | 100 | Plus |
| 3R | 32079331 | 3R | 25599504..25599852 | 645..989 | 1530 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:04:40 has no hits.
UFO06841.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:44 Download gff for
UFO06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 446..1543 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:11 Download gff for
UFO06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 484..1581 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:10 Download gff for
UFO06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 484..1581 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:10 Download gff for
UFO06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25594958..25595602 | 1..647 | 99 | -> | Plus |
| 3R | 25599507..25599959 | 648..1083 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:11 Download gff for
UFO06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21420680..21421324 | 1..647 | 99 | -> | Plus |
| arm_3R | 21425229..21425681 | 648..1083 | 95 | | Plus |
