UFO06842.5prime Sequence
972 bp (385 high quality bases) assembled on 2009-08-31
> UFO06842.5prime
CAATCCACATGCCTGGCTGCTGTGGATGCTGCTCAGCGCTCAGGCCGCGC
TACAAGCGCTTGGTCGATAACATCTTCCCGGTTAACCCTGAGGACGGGCT
GGTCAAGTCGAACATGGAGAAGCTGACCTTCTACTCGCTGAGCTCGCCGG
ACAAGCTGGACCGGATTGGGGAGTACCTGTACCGAAAGGCCACCAAGGAT
ATTAACCGAAAGCGCTATAAACTAGCCGAAATTGCCATGGAGGCCATGGA
CCTGCTTCTGCAGGCTTGTCATGCCCAGACCACACTCAACTTGTTTGTTG
AGTCCTTCCTGCGGATGGTGCAAAAGCTTCTGGAGGACTCGAACCCCAAC
CTTAAGATAATGGCCACCAATTCGTTTGTGAAGTTCGCCAACATCAACGA
GGACACACCATCTTACCTTCGACTATACGACTTCTTCATCTCGAAGTTCT
CTTCAATGTGCCACGGCGATGCGGCTAGCATGCGTGACAGTCTGCGTCTG
GCGGGAATCAAGGGATTGCAGGGCGTCATCCGGAAAACAGTGTCCGACGA
TCTTGTGGAGAACATCTGGGAGGCGGAACACATGGAAAAGATTGTGCCCT
CGCTGCTATTCAATATGCAGCTCCGGGGATCTAACGCCCGTAGAGGACGC
CACCAATGTGACGCCACCGGCCTTGGCCGAGGAAGTTCTCCGTGAGCTGG
TGGGACGCGCCTCCTTCGGACACATTCACAGTGTACTAAAGCCGCTGCTG
ACCCACTTGGACCGACACGAGTTGTGGGTTCCCAACACATTTGCCATTCA
CACATTCCGCATCGTGATGATCTCCATACAGCCACATACTCGTATACCGT
TGTGGAGACGCTGATGCATCATCTGGACTACACTTCTAGTCTCGCCGAAA
CGCGCACTACTCTCGCTGTCATTCTGTCTATATTATGCTTTGCTGCGGGA
GAAGCTGTCGTCCTCGTACTTG
UFO06842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stmA-RA | 2738 | CG8739-RA | 129..1086 | 9..960 | 4325 | 97.3 | Plus |
| stmA-RB | 3116 | CG8739-RB | 514..1464 | 16..960 | 4290 | 97.3 | Plus |
| stmA-RD | 2780 | CG8739-RD | 129..740 | 9..620 | 2970 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8732160..8732406 | 620..374 | 1160 | 98 | Minus |
| 2R | 25286936 | 2R | 8732676..8732881 | 220..15 | 1015 | 99.5 | Minus |
| 2R | 25286936 | 2R | 8732465..8732618 | 374..221 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 8731681..8731811 | 752..622 | 640 | 99.2 | Minus |
| 2R | 25286936 | 2R | 8731433..8731612 | 928..753 | 610 | 94.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:02:12 has no hits.
UFO06842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:43 Download gff for
UFO06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stmA-RA | 180..1124 | 1..943 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:18 Download gff for
UFO06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stmA-RA | 125..1069 | 1..943 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:31 Download gff for
UFO06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stmA-RA | 125..1069 | 1..943 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:31 Download gff for
UFO06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8732160..8732405 | 375..620 | 97 | <- | Minus |
| 2R | 8732465..8732618 | 221..374 | 100 | <- | Minus |
| 2R | 8732676..8732881 | 15..220 | 99 | | Minus |
| 2R | 8731441..8731612 | 753..920 | 94 | <- | Minus |
| 2R | 8731681..8731811 | 621..752 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:18 Download gff for
UFO06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4618946..4619117 | 753..920 | 94 | <- | Minus |
| arm_2R | 4619186..4619316 | 621..752 | 98 | <- | Minus |
| arm_2R | 4619665..4619910 | 375..620 | 97 | <- | Minus |
| arm_2R | 4619970..4620123 | 221..374 | 100 | <- | Minus |
| arm_2R | 4620181..4620386 | 15..220 | 99 | | Minus |
