UFO06843.5prime Sequence
1095 bp (1006 high quality bases) assembled on 2009-08-31
> UFO06843.5prime
CAGTCGACATGAATAGTCTCCTGCGACAAGGACTCCGCCTGGGCTGCTGC
CTTCCGGCTGTCCAGCAGCAAATCCACACCACCGCCGTGCACAGGACATT
CTGGGAGCGCGAGAAAAAGTCCGGCTACAAGACCAAGCTGCCGGAACCCT
CGAAGAAGCAGATGATCATGGACGGATTGAGGGACCTTAAAGAGGAGATG
AAGCTGTGGCGCCAGGAGGTCAAGGAGCAGTTCGAAAGTGATCCCATCCT
GGTCTTCCGGCCGGGTGAAACGGATGTGGTGTTCGATTTCAAGGCGCCGG
ATGTGCTGGACAAGTGGACGGTGACCACCGATGCGGATCACGGCGAGGGC
AAGAGTACTGCCACTCTGGAACTAAGTGCAGCCGGTGCTGGACTCTTCCA
TGGCCAAGTCAACTCGGATCACACCAAGGATGGCATTATCAAAAGGACGG
GATATGCGAACATTCGCACGAAGAGAGTGCGGAAATCCTTTAAGCGCGAG
ACCACCTATGACTGGACGCAGTACAACATGCTGGTCATGAAGGTGCGAGG
CGATGGACGCAGCTACCTGATCAACCTGCATACCGAAGGCTACTTCGACC
TGATGTGGAACGACATCTACCACTATGTTCTGTACACGCGCGGAGGTCCC
CACTGGCAGATAGCGAAGATTCCCTTCTCCAAGTTCTTCCTGTCTTCCAA
GGGACGTGTCCAGGATCGCCAGGGCGCCATACCGCTGAACAGGGTAACCC
ACTTCGGATTCTCCGTTGCCGCAAAGAAAGGGAATGGATGGCCCGTTTGG
CCTGAAATAGACTATGTGGGTCTGGAGTACGATCCCAGTCACCGCGAGGA
ATTCGCCTACGAATGTACCAGACTCCAAATACATCGTGCCACAGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
ATCATATCATAATCATAATCACAACTAGCCTAGAGATCTGGTCATGACTA
GTGCTTGGATTTTCACCAATAAAAACGCCGGCGCACGAGCGTTCTGAACA
ATTCGATGGAGTTCTGAGGTCATACTGGATCTATCAAGGAGTCAG
UFO06843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7598-RA | 1048 | CG7598-RA | 80..961 | 9..888 | 4225 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29737044..29737517 | 9..482 | 2295 | 98.9 | Plus |
| 3R | 32079331 | 3R | 29737575..29737983 | 482..888 | 1835 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:55:55 has no hits.
UFO06843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:42 Download gff for
UFO06843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 65..965 | 1..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:53 Download gff for
UFO06843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 70..970 | 1..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:58 Download gff for
UFO06843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 70..970 | 1..897 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:58 Download gff for
UFO06843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29737034..29737517 | 1..482 | 98 | -> | Plus |
| 3R | 29737576..29737987 | 483..893 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:53 Download gff for
UFO06843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25562756..25563239 | 1..482 | 98 | -> | Plus |
| arm_3R | 25563298..25563709 | 483..893 | 98 | <- | Plus |
