UFO06845.5prime Sequence
1133 bp (1014 high quality bases) assembled on 2009-08-31
> UFO06845.5prime
CAGTCGACATGGGACAGAAAGTTTCGCGCACCGACTTCGAGTGGGTGTAC
ACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAGAAGTACCC
GCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTGGGTGGCCG
GCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGAAGGACCTG
TCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGCATCATCAA
CCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCTGGCCTTTG
GACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCTGCAACCTG
CCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCATCTGGAACA
TCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACCCACACTGC
TGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGTGGGTGTGC
CTGCAGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAACCCGAAGCC
ACCTACACGCCTGGAGATTATTAACACCGTGGTGCAGCTAACTTTCAACG
CCCTGATCGTTTACTTTCTGGGCTGGAAGCCACTGGCCTATCTGTTGATC
GGCAGTATTCTAGCAATGGGACTGCACCCGGTGGCCGGACACTTTATCTC
GGAGCACTACATGTTCGCCAAGGGCTTTGAGACGTACTCCTACTACGGTC
CGCTCAACTGGATCACCTTCAATGTGGGCTACCACAACGAGCATCACGAC
TTTCCGGCGGTGCCCGGCTCCAGGCTGCCAGAGGTTAAGCGCATCGCTAA
GGAATTCTACGACACAATGCCACAGCACACCAGCTGGACCCGGGTTCTGT
ACGACTTCATCATGGACCCAGCAGTGGGACCTTACGCACGCGTGAAGCGA
CGCCAGCGCGGCCTGACCTCCGCAAGCTTTCTAGAACAATTCGTTTGGCG
CCGCGGGCCCAGGTAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACCTAGCCTAGGAGATCTGGTCATGACTATGGCTGGAATTCTCAAC
AAATAAACGCCCGGCGGCACCGAGCGTTGAACA
UFO06845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ifc-RA | 1784 | CG9078-RA | 148..1110 | 9..971 | 4800 | 99.9 | Plus |
| ifc-RB | 1656 | CG9078-RB | 418..982 | 407..971 | 2810 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5987615..5988180 | 406..971 | 2815 | 99.8 | Plus |
| 2L | 23513712 | 2L | 5986495..5986896 | 9..410 | 1995 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:38 has no hits.
UFO06845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:41 Download gff for
UFO06845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ifc-RA | 164..1143 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:46 Download gff for
UFO06845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ifc-RA | 140..1119 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:25 Download gff for
UFO06845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ifc-RA | 140..1119 | 1..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:25 Download gff for
UFO06845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5986487..5986892 | 1..406 | 99 | -> | Plus |
| 2L | 5987616..5988183 | 407..975 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:46 Download gff for
UFO06845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5986487..5986892 | 1..406 | 99 | -> | Plus |
| arm_2L | 5987616..5988183 | 407..975 | 99 | -> | Plus |
