UFO06846.5prime Sequence
1123 bp (1003 high quality bases) assembled on 2009-08-31
> UFO06846.5prime
CAGTCGACATGCAATGTTCTAGCTCTCGGCCAGTCGGAGGTAAAGCAGCC
GGTGGAGCAGAAGCAGGAGGGGCAGGAGCAACAGGCCAGATGACTGTGAC
CACCATGGAGGCACAGGTCAAGGCAGCACACCATCATCATCTACACCATC
CCACGGGCGGAGGGGCCCAGCACAAGGTGGAGGAGGAGGAGCCGGATCCT
GTTGAGGACGAGATGACCGTACTGCTGGCCAATAAGAACTTTCACTATGA
CGTCGCCTCCGATCTGGACGACGACGCTTTTGTGGAGCTCAAAGAAGACA
CCGCCCAAGCGGATGATGCGGGCGCGGGCGTTGGCTTCTACAATCCGGAT
GAACTGCTGCTCGATGACCAGCCACATCCGCAAGTCACGTGGCTGGACGA
CGACGAGATCGAGACGCTCGATCGCGTGACGCTGGACATGGGTAATATGT
TCTTCAATCGCGTCGACAGCCAGGACATCATCTATCAGCAGAAAAAGAAG
AGCATTAAGATGGTGGGCAAGTACATAATGGGCGATGTTCTCGGCGAGGG
ATCGTACGGCAAGGTGAAGGAGGCCATGAACTCGGAGAACCTGTGCCGCC
TGGCCGTCAAGATCCTGACTAAGCGGAAGTTGCGCCGGATTCCCAACGGC
GAACAGAACGTAACGCGCGAGATCGCCTTGCTGAAGCAGCTGAAGCATCG
ACATGTCGTGGAGCTGGTCGATGTTTTGTACAACGAGGAGAAGCAGAAAA
TGTACTTGGTCATGGAGTACTGTGTCGGCGGGCTGCAGGAGATGATTGAC
TATCAGCCAGACAAGCGGATGCCGCTGTTTCAGGCGCACGGTTACTTCAA
ACAGCTAGTCGACGGCCTGGAGTACTTGCACAGCTGCCGGGTCATCCACA
AGATATCAAGCCAGGCAACCTGCTGCTCCTCCCTGGATCAAACGCTGAAG
ATATTCCGACTTCGGTGGTGGCGGGAACAACTGGGATCTGTTCGCACCTG
ACGACCCATGCACGAACGGGCCCAGGTTCTCCGGCCCTCCAGCCACCGGA
GAATGCCAACGGACACCAAACGTCGCCGGCTTCAAGGTGACATTCTGTTC
ACGGAGTGACTCTTCTTAATTGG
UFO06846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lkb1-RJ | 2487 | CG9374-RJ | 351..1453 | 9..1113 | 5115 | 98.1 | Plus |
| lkb1-RD | 2422 | CG9374-RD | 345..1447 | 9..1113 | 5115 | 98.1 | Plus |
| lkb1-RC | 2391 | CG9374-RC | 339..1441 | 9..1113 | 5115 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13677110..13678186 | 9..1089 | 4895 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:13 has no hits.
UFO06846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:41 Download gff for
UFO06846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lkb1-RH | 475..1591 | 3..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:26 Download gff for
UFO06846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lkb1-RC | 335..1451 | 3..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:41 Download gff for
UFO06846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lkb1-RC | 335..1451 | 3..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:41 Download gff for
UFO06846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13677106..13678216 | 3..1119 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:26 Download gff for
UFO06846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9502828..9503938 | 3..1119 | 97 | | Plus |
