UFO06847.5prime Sequence
1096 bp (993 high quality bases) assembled on 2009-08-31
> UFO06847.5prime
CAGTCGACATGCTGTTAAACTGTACGAGGCTCACACACCTCTGCACGACT
CTCCGGGTCAGGAAAAGCAGCCAAATAAGGTTGTCCACATCATATAATCA
CCATTTGGGCAGGTGCCTCCACCATCGAACCGCCCGGTCGCTTCAACACA
GCCTTCCACCGCCGAACCGTTACCATAGCCACCTGCACCCAACACTCCGC
ATGCCGTGGTGGTGCATGCGACGTGGATTTGCACAGAGCAGCAAGTGGTT
AGCCAGGAATGCAAAGGCGAACTTACCAACTGCAGTTGGAGCCGGAATCG
TGCCCGCCCCCGTCAAAATGGGCAGATCCCAGTACGGCCGCCTGCTCAGC
CTGACTAAATCGGAGAAATGGGTGCTGACAGCGGGCATTGGCTGTCTGGT
AGTTTCTTCAGCTATCACCATGTCGGTTCCTCTGTTCCTGGGCAAGGTCA
TTGATGTAGTCTTTAATAAATCGGGCATGGATAGCGCAGCCATGGCCAAA
TTGGGCGAGTACTCGGTGCTGCTCTTCGGGATCTTCGTGCTGGGCGGATT
CGCCAACTTTGCCCGCGTCCATCTGTTTGGGAATGCGGCTCTCCGAATAG
TGCGCAGTCTAAGATCCCGGCTATACAGATCTATGCTTATGCAGGAGGTG
GGTTGGTTCGATACCAAGGGCACTGGAGAACTAATAAATCGGCTGAGCAA
CGATACCTTAATGGTGGGCACCTCGTTGAGCCAGAACGTATCGGATGGTC
TGCGATCTGTAGCCATGATCGGCGTCGGCACAGGCATGATGATCTACACC
TCCCCCCAGTTGGCTGCCGTGAGTGCCTTGGTGGTTCCCGCGATGGCGGG
CATGGCCATCGTGTACGGACGCTACGTAAGGCGGATCACCAAAGTAGAAC
TAGACAGTACGCCGAGATTATGAAGGTTTGCGGAGGAGCGATTTGGTATG
TTAAAACGGTTAGACCTTCTGCCGAGAACAACAGAGTAGCTGCCTTCGAT
GGCAACTGGATGAGCTCCTCGATTGGCTACAAAGAAGAAGTGCGAGCTAT
TTTCTTGATGACTGGCCTTCTGTGCACTTCTCATTATTTCATGGCG
UFO06847.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3156-RA | 2345 | CG3156-RA | 113..1210 | 9..1091 | 4995 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 487990..488362 | 9..381 | 1865 | 100 | Plus |
| X | 23542271 | X | 488419..488628 | 379..588 | 1050 | 100 | Plus |
| X | 23542271 | X | 488873..489076 | 588..791 | 1020 | 100 | Plus |
| X | 23542271 | X | 489142..489360 | 791..1005 | 835 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:20 has no hits.
UFO06847.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:40 Download gff for
UFO06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3156-RA | 44..1129 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:53 Download gff for
UFO06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3156-RA | 105..1190 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:25 Download gff for
UFO06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3156-RA | 105..1190 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:25 Download gff for
UFO06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 487982..488362 | 1..381 | 98 | -> | Plus |
| X | 488422..488628 | 382..588 | 100 | -> | Plus |
| X | 488874..489076 | 589..791 | 100 | -> | Plus |
| X | 489143..489425 | 792..1065 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:53 Download gff for
UFO06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 382015..382395 | 1..381 | 98 | -> | Plus |
| arm_X | 382455..382661 | 382..588 | 100 | -> | Plus |
| arm_X | 382907..383109 | 589..791 | 100 | -> | Plus |
| arm_X | 383176..383458 | 792..1065 | 93 | | Plus |
