UFO06849.5prime Sequence
1099 bp (994 high quality bases) assembled on 2009-08-31
> UFO06849.5prime
CAGTCGACATGGACGCTCCAGATGTGGGACGCATTATAAGGGCGCCGGCG
AGGCGCAAACGGAACGATGAACAGTTAATGGATAGGATAAAACTCAAAAA
GGTCCTGGGCCTCACCGTGTGCAGCAATGCGGCTCTGGATGTGTCCCCAG
TCAGCGGCCTGCTGGCCTATCCAGCTGGCTGCACCGTGGTGCTCTTCAAC
GCAAAACGCCAGACACAGGCCTACCTGGTCAACACCTCCCGCAAAGCATT
CACATCCGTGGCGTTCTCCCGGTGTGGTCGCTACGTGGCCACCGGGGAGT
GTGGCATCAATCCGGCCATCAAGGTCTGGGAGCTGGAGACTCCGAACGGA
AGTCTGGAGCACTGCAGCGGCGGCAGTGTTGTTGCAGAGTTTGTGGACCA
CAAATACGCCGTCACTTGTGTGGCCTTTTCGCCCACTGGCAAGTACCTGG
TTTCGGTGGGCTCCCAGCACGACATGATTGTGAATGTGTTCGACTGGCGG
GCCAACCTCAAGATGGCCTCGAATAAAATCAGCTCCAAGGTGGCTGCCGT
GTGCTTTTCCGAGGATGGCAGCTATTTTGTGACCGTGGGTAATCGCCACG
TGAAATACTGGTATCTAGAGGGTGGCAGAAAGTACAAGGATCCTATTCCC
CTGATGGGTCGCAGCGCCATTCTGGGCGATTTGCGGGACAACGACTTTTG
TGCGGTGGCGTGCGGCAAGGGGATCTGTGCGGAGAGCACGTACGCCATCA
CGCGGCAAGGACACTTGGTGGAGTTCAGCTCCCGCCGCCTGCTCGACAAG
TGGGTGCAGTGCCGCACCACCAATGCCAACTGTATCTGCGTGAATGAGAG
GTTCATTCTCGTGGGGTGTGCGGAGTCCATCATTCGCATCTTCAATTCGG
CCACGCTGGATACGTGACCACTCTGCCTAGAACTCATTACTTGGGGCGTG
GATGTGGCCCAGGCATCCAGATCAACACATCATGTCGGTGCCACAGCAGC
CAGTCCCGACTGCATTGCATGTGTTCGACGAACAGCGTTCGAAGGTGAAT
GCGATTACACGATCCCTCTCTTTTAACTCTGAATCTGCCGCACTCTCAC
UFO06849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-RH | 5953 | CG7337-RH | 1026..2101 | 8..1073 | 5050 | 98.6 | Plus |
| CG7337-RE | 6049 | CG7337-RE | 1026..2101 | 8..1073 | 5050 | 98.6 | Plus |
| CG7337-RA | 6406 | CG7337-RA | 1026..2101 | 8..1073 | 5050 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1934477..1934900 | 631..1046 | 1685 | 96.9 | Plus |
| 2L | 23513712 | 2L | 1933805..1934050 | 178..423 | 1230 | 100 | Plus |
| 2L | 23513712 | 2L | 1934118..1934328 | 422..632 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 1932055..1932147 | 86..178 | 465 | 100 | Plus |
| 2L | 23513712 | 2L | 1910071..1910149 | 8..86 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:06 has no hits.
UFO06849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:39 Download gff for
UFO06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RE | 660..1739 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:21 Download gff for
UFO06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RA | 1022..2101 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:54 Download gff for
UFO06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RA | 1022..2101 | 1..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:54 Download gff for
UFO06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1910064..1910149 | 1..86 | 96 | -> | Plus |
| 2L | 1932056..1932147 | 87..178 | 100 | -> | Plus |
| 2L | 1933806..1934049 | 179..422 | 100 | -> | Plus |
| 2L | 1934119..1934328 | 423..632 | 100 | -> | Plus |
| 2L | 1934479..1934900 | 633..1046 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:21 Download gff for
UFO06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1910064..1910149 | 1..86 | 96 | -> | Plus |
| arm_2L | 1932056..1932147 | 87..178 | 100 | -> | Plus |
| arm_2L | 1933806..1934049 | 179..422 | 100 | -> | Plus |
| arm_2L | 1934119..1934328 | 423..632 | 100 | -> | Plus |
| arm_2L | 1934479..1934900 | 633..1046 | 97 | | Plus |
