UFO06850.5prime Sequence
1127 bp (1001 high quality bases) assembled on 2009-08-31
> UFO06850.5prime
CAGTCGACATGACTCTTCCGCAAGCACAGCTGGACTTTTTCACGACGGCG
ACCAGTATGCTGGAATGGCATTACAATCTGGAGAGAAATAAGCCGGGTCT
GCTGGAACTGACCGGCGTTAGCCAGCATGGGCGGGCCACGATGAGCGGAC
TTAATGACTACGATTACCAGAGCCTGTCGTTTTTGAAATCGGATAGAACA
CATAACCTACAACAAATGCGAACGGTGACCAAGTCGGCTATTCCCAACGA
GATTCTGGAGCACTTTAAGCACATAAAATGCCACTGCACCATGGGCCTCT
TTCCGGAAATCGGACGTGCCTGGCTGACTATCGATTCGGAAATCTACATC
TGGACGTTCAATCAGACGAGGGATGTGGCGTACTACGATGGCCTCAGTCA
TCTGATCGTAAGCGTTGGCCTGGTGAAACCAAAACCCGGCGTCTTTGTGC
AGGACGTCAAGTACCTCCTGGTTCTCACTACGCCCATTGAGGTCATTGTC
CTGGGCGTGACATTCGGTGAGAGCTCGTACAACGAAATGCAGCTGATGAA
CCGGCCAGTTTTTGTGATTGGTACCGACAACGTGTCCATCAGCGTCATCA
AAGGAACGGATGACGGCCGCATCTTTTTGGGCGGTCGCGATGGCTGCCTC
TATGAAATTTACTATCAGGCCGAGTCCAGTTGGTTTGGCAAGCGATGCAA
GAAAATAAATCTCTCCCAAGGACTGGTCTCCTATATGGTTCCCAGTTTTT
TGAAGGTCTTTTCGGAAGTGGATCCAATCGAACACATTGAGATCGATAAC
AGTCGCAAGCTTCTCTATGTCCTTACGGAAAAAGGTGTCATTGAGGCTTG
GGACATCAGTACGAGTTACACGACAGCTCGAAGACTAGTCGGATTACCCA
GAACGATATTACGAATCAAGCAGTTAGTCTGATCACGACTGGTGGACGCG
TCCATTTTTAATAGTGTGAAAGCCATCTGCCTCTGGAGCGCCGACGATGC
GACAAACTACATCTGTGGCGGTTACTCAGTGTGGGGGTGCGGCTCTTTTT
TCTTCTCAACATCGCTAAATGTGAAGCACATTTGTTCCGCGCGTTCTTGC
AGTCAGGTGAAATACAGATCGTCAGCC
UFO06850.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup154-RD | 5420 | CG4579-RD | 161..1274 | 9..1117 | 5115 | 98 | Plus |
| Nup154-RC | 4612 | CG4579-RC | 161..1274 | 9..1117 | 5115 | 98 | Plus |
| Nup154-RA | 4371 | CG4579-RA | 161..1274 | 9..1117 | 5115 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11005368..11005862 | 271..765 | 2475 | 100 | Plus |
| 2L | 23513712 | 2L | 11005920..11006094 | 764..937 | 825 | 99.4 | Plus |
| 2L | 23513712 | 2L | 11005139..11005301 | 108..270 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 11004980..11005078 | 9..107 | 495 | 100 | Plus |
| 2L | 23513712 | 2L | 11006166..11006302 | 942..1078 | 345 | 89.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:13 has no hits.
UFO06850.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:37 Download gff for
UFO06850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 151..1247 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:48 Download gff for
UFO06850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 154..1250 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:21 Download gff for
UFO06850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 154..1250 | 1..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:21 Download gff for
UFO06850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11004973..11005078 | 1..107 | 97 | -> | Plus |
| 2L | 11005139..11005301 | 108..270 | 100 | -> | Plus |
| 2L | 11005368..11005861 | 271..764 | 100 | -> | Plus |
| 2L | 11005921..11006093 | 765..936 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:48 Download gff for
UFO06850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11004973..11005078 | 1..107 | 97 | -> | Plus |
| arm_2L | 11005139..11005301 | 108..270 | 100 | -> | Plus |
| arm_2L | 11005368..11005861 | 271..764 | 100 | -> | Plus |
| arm_2L | 11005921..11006093 | 765..936 | 99 | -> | Plus |
