UFO06852.5prime Sequence
1121 bp (1025 high quality bases) assembled on 2009-08-31
> UFO06852.5prime
CAGTCGACATGGTGGAAAATATATCACTGAATGTTACTGTAAAGTCGTCG
GCTCGGAAAAATCAACAGTCGCCCGCGCTTTCGGTTAAAAAACGTGCACA
GAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAAGCCCAAAGTCA
AGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAGTTGAACCTACA
AATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCTTCAGTTTCCTC
CAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAAAGCAAATGCAT
CCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAACCACCTGTTAAG
AGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACAAAGCCGGTGGT
TGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAGATTGGGCAAGA
AACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAGAGCAGATCACG
CGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAATCAATTACCCAC
GCCCGGTGACCTTTTCCGCGCTCAACTGGAGGAGGAGAGGCGGCAAAAGC
GTCGTGAAGAGGGAGGAGGGGATCAGGAAGCCAGCGCCGATGAGGAGGAT
GCGAAGAACAACTCAGGAGGGGGATCTCCGAGGGTAAAACCGAGTTCAGC
CGTTAAGGAGTCCAAAAAGTCATCAGATATTGAGGATTCCGGCGAATCCG
GCGAAGAATCTGCAACATCCGATGAGGAACCAGATGAATCCAGTGCACAA
TCTCCTGGACAAGAAAAGGAACCCAAACAAACCGCGAAGAAACCACCGAA
AGCCGAGGAAACCTCGTCCACAAACCGTTTCGCACCAAGAAGATCGGCCT
CTTCGACCAAAGCGACGTGAGCACTCAAGCAACTGGGCCAAAGAGCGGTG
AAGCCCGTCAAGAGACCATCTTTACAGCTCTAAAATATCCACGTTGGGAC
TGCATCCTCATGCTGTAAAGAACTTGAGATCTGCTTAGCATTCGAGAGCT
ACTAGCGTGCAGCGAAAGAACATTCCGAGTTCTCAAGACAGGATGTGTCT
CGTACGTTCCGAACGATTCGG
UFO06852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8611-RA | 3614 | CG8611-RA | 104..1215 | 9..1109 | 5165 | 98.4 | Plus |
| CG8611-RC | 3917 | CG8611-RC | 104..1218 | 9..1109 | 5125 | 98.1 | Plus |
| CG8611-RB | 4145 | CG8611-RB | 104..1218 | 9..1109 | 5125 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17420905..17421927 | 1076..62 | 4695 | 98.6 | Minus |
| X | 23542271 | X | 17421983..17422042 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:26 has no hits.
UFO06852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:35 Download gff for
UFO06852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RA | 114..1199 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:47 Download gff for
UFO06852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RA | 104..1189 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:00 Download gff for
UFO06852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RA | 104..1189 | 9..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:00 Download gff for
UFO06852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17420895..17421920 | 69..1084 | 98 | <- | Minus |
| X | 17421983..17422042 | 9..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:47 Download gff for
UFO06852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17314928..17315953 | 69..1084 | 98 | <- | Minus |
| arm_X | 17316016..17316075 | 9..68 | 100 | | Minus |
