UFO06853.5prime Sequence
1122 bp (1001 high quality bases) assembled on 2009-08-31
> UFO06853.5prime
CAGTCGACATGGCACTGAGCGATGCTGATGTACAAAAGCAGATCAAGCAC
ATGATGGCGTTCATTGAGCAGGAGGCCAATGAGAAAGCCGAGGAGATCGA
TGCCAAGGCCGAGGAGGAGTTCAACATTGAGAAGGGACGCCTGGTCCAGC
AGCAGCGTCTCAAGATCATGGAATACTACGAGAAGAAGGAGAAGCAAGTT
GAGCTGCAGAAGAAGATTCAGTCCTCCAACATGCTCAACCAGGCTCGTCT
GAAGGTGCTGAAAGTGCGCGAGGACCATGTGAGCAGCGTGCTGGATGATG
CCCGCAAGCGTCTCGGCGAGGTCACCAAGAATCAGTCCGAGTACGAGACT
GTGCTGACCAAGCTCATCGTCCAGGGCCTGTTCCAGATCATGGAGCCCAA
GGTGATCCTGCGCTGCCGCGAGGTGGACGTCCCCCTGGTACGTAACGTCC
TGCCTGCCGCTGTGGAGCAATACAAGGCCCAGATCAATCAGAACGTCGAG
CTGTTCATCGACGAGAAAGACTTCCTCTCTGCTGATACCTGCGGTGGTGT
TGAGCTGCTGGCCCTCAACGGACGCATCAAGGTGCCCAATACGCTGGAGT
CCAGATTAGACCTCATTTCGCAGCAGCTGGTGCCCGAGATTCGTAACGCA
CTTTTCGGCCGCAACGTCAATCGCAAATTCACCGACGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCGACATGCAGCATCACAAACGGCATG
ATGATCTGATCGCAGCGCATCAGCACTTGTCGCTTGGCGTATATATTTGC
CATGTGAAACGGGGGCGAAGAAAGTTGTCATATTGCACGTTAAATCAATC
TGGGAACTTCCGACCCTAGAAT
UFO06853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha26-RC | 2926 | CG1088-RC | 236..921 | 1..686 | 3400 | 99.7 | Plus |
| Vha26-RB | 2171 | CG1088-RB | 138..823 | 1..686 | 3400 | 99.7 | Plus |
| Vha26-RA | 2269 | CG1088-RA | 236..921 | 1..686 | 3400 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5592853..5593188 | 249..584 | 1665 | 99.7 | Plus |
| 3R | 32079331 | 3R | 5592565..5592784 | 39..258 | 1100 | 100 | Plus |
| 3R | 32079331 | 3R | 5593245..5593351 | 580..686 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:08 has no hits.
UFO06853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:35 Download gff for
UFO06853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha26-RB | 170..861 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:10 Download gff for
UFO06853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha26-RA | 236..927 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:58 Download gff for
UFO06853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha26-RA | 236..927 | 1..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:58 Download gff for
UFO06853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5592568..5592780 | 42..254 | 100 | -> | Plus |
| 3R | 5591998..5592038 | 1..41 | 95 | -> | Plus |
| 3R | 5592859..5593185 | 255..581 | 100 | -> | Plus |
| 3R | 5593247..5593357 | 582..694 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:10 Download gff for
UFO06853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1418969..1419079 | 582..694 | 96 | == | Plus |
| arm_3R | 1417720..1417760 | 1..41 | 95 | -> | Plus |
| arm_3R | 1418290..1418502 | 42..254 | 100 | -> | Plus |
| arm_3R | 1418581..1418907 | 255..581 | 100 | -> | Plus |
