UFO06856.5prime Sequence
1102 bp (988 high quality bases) assembled on 2009-08-31
> UFO06856.5prime
CAGTCGACATGAAAATCAAACATTATCCGGGCAAAGCCGTCGATGCGAGT
CTCTCGCTGGAGGGCAGCAGTGCCATGGGTGCCCTGTACGAGGCCAATTG
GCTGAGGGCTGCGAATCAGCCCGCCGCTCCAGCCACAACGGGCACCAAAT
TGAGCAGGCAGAGCAGCTCCGCCGGCAGCAGTTTCCTCATCGAGGGCATC
TCCGCCCTGAGCAAGTACCAAATGACCCTGGAGAATATCCGGCAGCTGGA
GCTGCAGTCGCGTGACAAACGCATAGCGAGCACGATTAAGGAACTCAGCG
GCTATAGGCCATCGGCACTGCAGCATCATCAGCAGCAGCAGATGCATAAC
GTTTGGGTGGCCGAGGATCAGGATCAGGAACACGAAGAACTGGAAGATGC
TTCGGAGGGAAAGGAGAAGTTGGCTAGTATCCAGGAACCCCCTGCAGTTA
ACCACTATGTCCTGGACCCGACGGAGAGACCAAGGGTTCCCAGACCCCGG
CAACAGTTCTCCGTGAAACCGCCTTCCTTGCGTCGCTCCCAAACCATGTC
GCAACCGCCCAGTTATGCCACCTTGAGATCGCCCCCGAAAATCAAGGAAA
ATCTTAGCAAAAGTTCCTCCGCCTACTCCACATTCTCCTCGGCTGCAGAG
GATTCCCAGGATCAAGTAGTGATCTGCCAACAGCCACAGAGACTGATGGC
TCCGCCACCCAGAGAACCGCCTCCGGAGCCACCCAAAAGGGTATCGAAAC
CCCTGAGCAGATCGCAAACTTCGGTTCAGCGGTACGCCACGGTTAGGATG
CCCAACCAGACCACTTCGTTCAGCAGAAGTGTGGTCAGGTCTAGGGATTC
CACCGCCTCCCAGAGACGTCTCAGTTTGGAGCAGCCATCGAGGGACTCAA
ACTGGAGGGGGAGAAGGCTGTTCGTCAGAAGAGTCCACAAATCTCACCAG
CTGCCAGCAGTAATGGCAGCTTCAAGATCTCAACGGGGGAGGGATTTCTG
TATCCACGACCGCGCCCCCATCGTTCCAGTGCACACATATGCCGTCGACG
CAGGACGGAATCTCAGGACATCCAGCGGGTGGGGCAGAGAGAGCGAAAGA
TG
UFO06856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| for-RK | 3223 | CG10033-RK | 378..1453 | 9..1078 | 5075 | 98.7 | Plus |
| for-RG | 3826 | CG10033-RG | 438..1513 | 9..1078 | 5075 | 98.7 | Plus |
| for-RD | 4218 | CG10033-RD | 830..1905 | 9..1078 | 5075 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3626388..3627438 | 1058..9 | 4895 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 19:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6864 | 234..385 | 133 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2521 | 311..397 | 131 | 62.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1098 | 309..346 | 111 | 79.5 | Plus |
UFO06856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:07 Download gff for
UFO06856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RJ | 319..1402 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:35 Download gff for
UFO06856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RG | 430..1513 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:46 Download gff for
UFO06856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RD | 822..1905 | 1..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:46 Download gff for
UFO06856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3626363..3627442 | 1..1078 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:35 Download gff for
UFO06856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3626363..3627442 | 1..1078 | 98 | | Minus |
