UFO06857.5prime Sequence
1093 bp (1009 high quality bases) assembled on 2009-08-31
> UFO06857.5prime
CAGTCGACATGTCGGTACACTATAAATTTAAGAGTACACTCAACTTTGAT
ACAATTACTTTTGATGGACTTCACATTTCTGTCGGGGACTTAAAAAGGGA
GATTGTGCAGCAGAAGCGACTGGGCAAAATCATCGACTTTGATCTCCAAA
TAACAAATGCGCAGAGTAAAGAAGAATACAAGGACGATGGGTTCCTTATT
CCCAAAAACACAACGCTGATCATATCGCGCATCCCCATCGCCCATCCCAC
AAAAAAGGGCTGGGAGCCACCAGCAGCAGAAAATGCCTTTTCGGCGGCGC
CTGCCAAGCAGGACAACTTCAACATGGACCTGTCCAAAATGCAAGGCACG
GAGGAGGACAAAATCCAGGCCATGATGATGCAGAGCACAGTCGACTATGA
TCCTAAGACGTACCATCGTATTAAAGGACAATCGCAAGTGGGAGAAGTTC
CCGCATCCTACCGATGCAACAAATGCAAGAAAAGCGGACACTGGATCAAA
AACTGTCCCTTTGTGGGGGGAAAGGACCAGCAAGAGGTCAAACGGAATAC
TGGTATTCCGCGGTCTTTCCGCGACAAGCCAGATGCGGCTGAGAACGAAT
CAGCCGATTTTGTGCTGCCTGCTGTACAAAACCAAGAGATACCGGAGGAT
CTGATATGCGGCATATGCCGAGATATATTCGTCGATGCTGTCATGATACC
CTGCTGCGGAAGTTCCTTTTGTGACGACTGTGTGCGAACCTCCTTATTGG
AGTCAGAGGATAGTGAGTGCCCCGATTGCAAGGAGAAGAACTGTTCGCCT
GGCTCCCTGATACCTAATCGGTTCTTGAGGAATTCGGTGAACGCCTTTAA
AAATGAGACTGGGTATAACAAAGCGCGGCTAAGCCAGCTGCAGTAAAAAT
GAGAAAAACCTCCTGTTGAAAAAGAAGTGGAGAAAAAGCCAGTCGCGGAG
GTGGAACCCGAGAGACTGGAGGTGAAACTGAAAGCAAAAGATCGAAACAT
GGCAGTATCGCAATCGATCTCGAGCCTCCCGCAACCGACATCCGAGGAAA
GATAATGATCGACTCAGATAACTACCTTAATGCAGCTGACTGA
UFO06857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snama-RA | 3936 | CG3231-RA | 119..1165 | 9..1036 | 4765 | 98 | Plus |
| snama-RB | 1972 | CG3231-RB | 247..1293 | 9..1036 | 4765 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24088065..24088543 | 410..887 | 2345 | 99.8 | Plus |
| 2R | 25286936 | 2R | 24087774..24088013 | 173..412 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 24087551..24087716 | 9..174 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 24088621..24088679 | 903..961 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:22 has no hits.
UFO06857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:07 Download gff for
UFO06857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snama-RA | 117..1072 | 9..961 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:40 Download gff for
UFO06857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snama-RB | 247..1202 | 9..961 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:56 Download gff for
UFO06857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snama-RB | 247..1202 | 9..961 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:56 Download gff for
UFO06857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24087551..24087716 | 9..174 | 100 | -> | Plus |
| 2R | 24087776..24088010 | 175..409 | 100 | -> | Plus |
| 2R | 24088065..24088543 | 410..887 | 99 | -> | Plus |
| 2R | 24088604..24088679 | 888..961 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:40 Download gff for
UFO06857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19975074..19975239 | 9..174 | 100 | -> | Plus |
| arm_2R | 19975299..19975533 | 175..409 | 100 | -> | Plus |
| arm_2R | 19975588..19976066 | 410..887 | 99 | -> | Plus |
| arm_2R | 19976127..19976202 | 888..961 | 97 | == | Plus |
