UFO06858.5prime Sequence
1055 bp (961 high quality bases) assembled on 2009-08-31
> UFO06858.5prime
CAGTCGACATGGATGTAGACTTCGGCGCGCAGGCGGGGCAGTCCTACCGC
ACGGTGCAGCTTTCCGCGAAAGAAGTGCTCGCTGCTGGCCGCCGTCAGCA
TTATTGCAACATGATCGACTTGTTGGCCAGCAGCTGCAAAAGCTCCGGTT
TGATAGCCACTTCCTTTACGGATGACGAACTGGTGGAGTTCTGGCTGGGA
GATATCCTGCCGCTTATGTTCGATGCGGACCGAAAGATCCAGGACTGTGC
CGTGGCAGCTCTTGCGGAGGCACTGGTGGCTCTTGACGTGTCCGTTATCC
ACTCGGCCAAGTGCTGGCCTCAGATCCGCAGTGAATTTGTCGACAAATAC
ACCATCATCATCGGGGAGATGCGCGATGCTAAGAACTCCAACTGGCACAA
AATATGGACGCTGCTGGTACAAATCATGGACGAGGATTTGCTCAGGGGCT
GTGTATATATCAACAAATTCTTGGCTCTGGTTGAATTGGGCTTCCGCAAC
CCGGATAATGGTGTGCGGTCGGAGGCATTTCTTTGCTGGCGCGTGCTCAT
CAAGATCTTTGCCGCCTACGACGAACTGACATCCGCGAAGAGGCTTCGTT
TGCTGCTGATCCCCCTGCGCACTTCACAATCGCGATCCTCGCACGTGAGT
GGCATCAAGTTGCGAGTGTGGTGGTATCTGCTCAGCTGCCTGGACCACGA
GTTACCCAAGTCTTTTGACAGCGCCGTGGAGCACTTTTTGGCTTTTATGC
TAGGCGGAGGTCCACGAAATCTGGCTACGGGTCTGGCGCACAACTACCAG
ACGGCTCGGGAGTTGGCCCTGCCCTGCCTTGTGGCCCTTTGGGGCGTGAG
TCCAGTGACCGTTGCAGCGTCTATGAGAGAGCTACGCTTGAGACTTGGTC
CAGCCTCGCTCTGATGAGCGTAGAGGTATTCACAGCATGAAACTCTTTTG
CCGCTGCCGTTTCCGATTGAAGTGCTACGAGACGATGCAAAGAGCGGACA
CTCCTGCTGCATGCTCTGCGGATCTGTGCTGGCATGGTCCGTGGAGTGCT
CCCTC
UFO06858.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rif1-RA | 4605 | CG30085-RA | 141..1188 | 8..1029 | 4575 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15867992..15868819 | 931..111 | 3790 | 99.2 | Minus |
| 2R | 25286936 | 2R | 15868905..15869007 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:05:04 has no hits.
UFO06858.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:06 Download gff for
UFO06858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30085-RA | 130..1186 | 1..1029 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:05 Download gff for
UFO06858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rif1-RA | 132..1188 | 1..1029 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:07 Download gff for
UFO06858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rif1-RA | 132..1188 | 1..1029 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:07 Download gff for
UFO06858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15867875..15868819 | 111..1029 | 96 | <- | Minus |
| 2R | 15868905..15869010 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:05 Download gff for
UFO06858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11755380..11756324 | 111..1029 | 96 | <- | Minus |
| arm_2R | 11756410..11756515 | 1..110 | 96 | | Minus |
