UFO06859.5prime Sequence
1094 bp (983 high quality bases) assembled on 2009-08-31
> UFO06859.5prime
CAGTCGACATGAATTTACCACCAAACCCTGTAATTGCTCGTGGACGTGGT
CGAGGAAGAAAGCCCAATAATGTAGAGGCCAATCGCGGCTTCGCTCCTTC
GCTGGGTCAGAAGTCGGACCCTTCCCACTCGGAAGGAAATCAAGCATCCG
GAGGCAATGGTGGTGGTGGTGATGCTCAAGTGGGTCCCTCGATAGAGAAA
TCCAGTTTGAGCGCGGTGCAAATGCACAAGTCCGAGGGCGATCCGCGTGG
CTCCGTGCGCGGCCGTAGGCTAATAACGGATTTGGTGTATTCACGTCCTC
CAGGGATGACCAGCAAGAAAGGAGTGGTTGGCACTCATATTACCGTGCAG
GCAAACTATTTTAAGGTATTAAAGCGTCCAAACTGGACCATCTACCAGTA
CCGCGTCGATTTTACGCCTGATGTGGAGGCTACACGACTGCGACGGTCTT
TCTTGTATGAACATAAAGGGATCCTGGGCGGCTACATCTTTGACGGAACC
AATATGTTTTGCATCAATCAGTTCAAAGCTGTTCAAGATAGCCCCTATGT
TTTGGAACTGGTTACGAAGAGTCGTGCTGGCGAAAACATTGAAATTAAGA
TCAAGGCTGTTGGATCTGTGCAATCTACGGATGCCGAGCAGTTTCAGGTC
CTTAATCTCATACTGCGCAGGGCCATGGAGGGCTTAGACTTGAAGCTGGT
CTCGCGCTACTACTACGATCCTCAAGCTAAGATTAATTTGGAGAATTTCC
GCATGCAATTATGGCCTGACTATCAGACTTCGATTCGCCAGCACGAAAAT
GATATATTACTTTGTTCCGAGATATGCCACAAGGTTATGCGAACTGAGAC
CTTGTACATATTTTGTCCGATGCTATTCGCGACAGTGACGATTATCAAGT
ACATTTAAGCGTGCAGTAATGGGTATGGTAATACTACGGATATAATAACA
AACCTATCGCATTGACGATGTCGACTTTCATCGACGCCATTGTGCAAATT
TAAACATGACGGTGAGATTTCGTACGTGATTACTTTAAGAGCGATAACAT
ATCATCCGGACTGGAGCACCTTTGTCATGTTCTGTCGCAGAACA
UFO06859.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aub-RA | 2825 | CG6137-RA | 112..1160 | 9..1046 | 4950 | 98.8 | Plus |
| aub-RC | 2808 | CG6137-RC | 184..1143 | 98..1046 | 4490 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11000165..11000659 | 731..237 | 2475 | 100 | Minus |
| 2L | 23513712 | 2L | 10999912..11000108 | 924..730 | 870 | 98.5 | Minus |
| 2L | 23513712 | 2L | 11000785..11000925 | 238..98 | 690 | 99.3 | Minus |
| 2L | 23513712 | 2L | 11001269..11001365 | 105..9 | 485 | 100 | Minus |
| 2L | 23513712 | 2L | 10999742..10999855 | 1028..922 | 275 | 93 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:52 has no hits.
UFO06859.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:05 Download gff for
UFO06859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-RA | 119..1175 | 3..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:12 Download gff for
UFO06859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-RA | 106..1162 | 3..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:43 Download gff for
UFO06859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-RA | 106..1162 | 3..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:43 Download gff for
UFO06859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10999914..11000106 | 732..922 | 98 | <- | Minus |
| 2L | 11000165..11000658 | 238..731 | 100 | <- | Minus |
| 2L | 11000786..11000918 | 105..237 | 100 | <- | Minus |
| 2L | 11001270..11001371 | 3..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:12 Download gff for
UFO06859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11001270..11001371 | 3..104 | 96 | | Minus |
| arm_2L | 10999914..11000106 | 732..922 | 98 | <- | Minus |
| arm_2L | 11000165..11000658 | 238..731 | 100 | <- | Minus |
| arm_2L | 11000786..11000918 | 105..237 | 100 | <- | Minus |
