UFO06860.5prime Sequence
1100 bp (980 high quality bases) assembled on 2009-08-31
> UFO06860.5prime
CAGTCGACATGTTGACGACCGTCCTGAACTTTGCCCAGCGCGTCGCCGAG
ATTTCTTTGCTCGGCGGCATCGAGATTGCATCAGTTGCCCTTATTGTCTA
CTATATATTCGCCAAGACGAGGGCACCGGTAATCATCGCTAGCCTGTTTC
CCAATCTGAATCTGAGCTACCGGACGAGCTACCTCAGCAAGATCAACACC
ATACGCAGCGATCTTCTGGTCACTTTGCGATCATCCAATGAGCCCAAGAC
GCAGAATTCGGTGGCTCATGGCATTGGGACGCAGAATATGTTGGAGCTGA
CCCCGCATTCGGGTCAGAAGCCTTTTAAGAAGCTATTCGACTGGGGCGTG
CTCTTCCCATATGTTGCCCAGGTGGTGCGCAGCGAGAAGTTCGAGTACCG
ACAGGTCACCGAGATCGTGCACAACGATGCTGTACTGAAGCATGCAATTA
AACAGGCCGCCGAGCAGACGCTAAGGGAGCAGAGATATGCTAAAAATGGT
CATCGTCTGCTCACGCGCAGTGCTAGTGGAGATCAGGAGGCGCAGGAGGA
GGAGGACGAGAAGAGGGGTATATCCTATCAGGCCATTCTGCGTAAGCAGG
AGCAGCGCGCCATTAGCATACTGAAGGACATGGGCTCCACTCTGAACAAT
GGCCTTTTGGCCTTCACTTCCTGGATCCTGTACAAGTTGCTGCCCTGCTT
CCTCTCCGGAGTCGTTACGAACACGAAGCAGATCGAGATGCTCAAAACAG
CCACAGAGCGTTCGCCGGGCACTCCGCTGATATTTGTTCCGCTGCATCGC
AGCCACTTGGACTACATCATGGTCACATGGATACTCACGAACAACGATAT
ACGCAGTCCTCTGGTAGCCGCTGGCAACAACCTGCAAATTCCGGTCTTTG
GTGGGCTCCTACGTGGTTTGGGGTGCTTTCTTCATCAAACGCAGATGATC
CTGGTGGAGGGCAAGAAGACGTGCCTTTATCGCGCTGCTCTACACCTGTA
TTCTGAACCACGCCTTGAGCAGGCCACAACGGTCAGTCTTTCATCGAGGC
GACGAACCCCGCCACTGCAAGCTTGCATGCCCAGGGCGCAATTCTTTTCT
UFO06860.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mino-RE | 3176 | CG5508-RE | 216..1309 | 8..1097 | 4950 | 97.7 | Plus |
| mino-RA | 3546 | CG5508-RA | 690..1783 | 8..1097 | 4950 | 97.7 | Plus |
| mino-RB | 2687 | CG5508-RB | 168..1029 | 240..1097 | 3790 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27930202..27930816 | 403..1018 | 2740 | 97.7 | Plus |
| 3R | 32079331 | 3R | 27929981..27930147 | 240..406 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 27929229..27929349 | 120..240 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 27925880..27925994 | 8..122 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:42 has no hits.
UFO06860.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:03 Download gff for
UFO06860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5508-RA | 682..1740 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:32 Download gff for
UFO06860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5508-RA | 684..1742 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:37 Download gff for
UFO06860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mino-RA | 684..1742 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:37 Download gff for
UFO06860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27925874..27925993 | 1..121 | 97 | -> | Plus |
| 3R | 27929231..27929348 | 122..239 | 100 | -> | Plus |
| 3R | 27929981..27930145 | 240..404 | 100 | -> | Plus |
| 3R | 27930204..27930861 | 405..1058 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:32 Download gff for
UFO06860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23751596..23751715 | 1..121 | 97 | -> | Plus |
| arm_3R | 23754953..23755070 | 122..239 | 100 | -> | Plus |
| arm_3R | 23755703..23755867 | 240..404 | 100 | -> | Plus |
| arm_3R | 23755926..23756583 | 405..1058 | 97 | -> | Plus |
