UFO06863.5prime Sequence
1129 bp (1019 high quality bases) assembled on 2009-08-31
> UFO06863.5prime
CAGTCGACATGTTCATTCCGGCCGCCCAGTCCGCGTACAGGACGCTGCGC
AAGACCCAGCCACGCGTCCGGCTCAACGCCATCTTCAAAAATGGCTACTC
CAGCAAGGTGGAGTACAAGCCCATCCGGTCAGTGCTGGTGGCTAACCGCG
GTGAGATCGCCATCCGAGTGTTCCGTGCCTGCACAGAGTTGGGCATCAAA
TCGGTGGCGGTCTACTCGGAGCAGGATAAGATGCACATGCACCGACAAAA
GGCCGACGAGTCGTACATAGTGGGCAAGGGTCTGCCCCCGGTGGAGGCCT
ACCTCAACATTCCAGAGCTAATTAGGGTGTGCAAGGAGAACGATGTGGAT
GCCGTGCATCCCGGCTACGGGTTCCTTTCAGAGCGCAGTGACTTCGCCCA
AGCGGTGATTGATGCTGGACTGCGCTTCATTGGCCCCTCACCCGAAGTCG
TCCAGAAGATGGGTGATAAGGTGGCGGCTCGTGTGGCGGCCATTGAAGCG
GGTGTGCCCATTGTGCCCGGCACCGACGGTCCAGTGACCACCAAGGAGGA
GGCACTGGAGTTCTGCAAGAAGCACGGACTGCCCGTTATCTTCAAGGCCG
CTTACGGAGGCGGAGGTCGCGGCATGCGCGTCGTCCGCAAAATGGAGGAT
GTGGAGGAGAGCTTCCAGCGAGCCAGTTCCGAGGCCAAGGCCGCCTTTGG
CAATGGTGCGATGTTCATTGAGAAGTTCATCGAGCGACCGCGTCACATTG
AGGTTCAACTGCTGGGAGACAAGGCCGGGAATGTAGTGCATCTGTACGAA
CGTGACTGCTCCGTGCAGCGTCGCCACCAGAAAGTGGTGGAGATCGCCCC
AGCGCCACGCCTGCCCATCGAAATCCGGGACAGATGACGGAGCAGCAGTG
CGCTTGGCCCGCCATGTGGCTATGAAACGCCGGAACCGTGAGTTCCTTTG
CGACGAGTCCGCAACTTCTACTTCATCGAAGTGACGCCCGTCTACAAGTG
AGCACACGTCACCGAGGAAATACAGCATCGATTGGTGCAGTCGCAATCGC
GTGGCGAGGCATGACCTACCGATGGCTACCGCAGACAAGAATCTCCGTTG
CCTATGCAATCATGGGCGGGAACCGGAAT
UFO06863.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1516-RM | 4374 | CG1516-RM | 346..1420 | 8..1066 | 4945 | 98.3 | Plus |
| CG1516-RL | 4256 | CG1516-RL | 228..1302 | 8..1066 | 4945 | 98.3 | Plus |
| CG1516-RK | 4191 | CG1516-RK | 163..1237 | 8..1066 | 4945 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9855097..9856022 | 1022..106 | 4150 | 98.8 | Minus |
| 2R | 25286936 | 2R | 9856081..9856183 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:17 has no hits.
UFO06863.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:02 Download gff for
UFO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1516-RE | 115..1200 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:04 Download gff for
UFO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1516-RK | 157..1219 | 1..1050 | 98 | -- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:27 Download gff for
UFO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1516-RK | 157..1219 | 1..1050 | 98 | -- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:27 Download gff for
UFO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9855041..9856020 | 108..1070 | 98 | <- | Minus |
| 2R | 9856084..9856186 | 1..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:04 Download gff for
UFO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5742546..5743525 | 108..1070 | 98 | <- | Minus |
| arm_2R | 5743589..5743691 | 1..107 | 96 | | Minus |
