UFO06864.5prime Sequence
1121 bp (1004 high quality bases) assembled on 2009-08-31
> UFO06864.5prime
CAGTCGACATGTCCTTCGCTCAGTTCTTTGTCGCCTGCTGCCTGGCCATC
GTCCTCCTGGCCGTGTCCAACACACGGGCCGCAGTTCAGGGTCCACCTCT
ATGCCAGTCTGGCATCGTCGAGGAGATGCCGCCGCACATCCGGAAGGTGT
GCCAGGCCCTGGAGAACTCCGATCAACTGACGTCGGCGCTGAAGTCCTAC
ATCAACAACGAGGCATCCGCTTTGGTGGCCAACTCTGATGACCTGTTGAA
GAACTACAACAAGCGAACGGATGTCGATCACGTCTTCCTGCGTTTCGGAA
AACGTCGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGG
CGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTC
ACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGG
GAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGT
GTAGAAACTGCCGGAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACG
TTTCAGTTTGCTCATGGAAACGGTGTAACAAGGTGAACACTATCCCATAT
CACAGCTCACGTCTTTCATGCATACGAAATCAGATGAGCATCATCAGGCG
GGCAAGAATGTGATACGCGATAAACTTGGTGCTTATTTTTCTTTACGTCT
TTAAAGCGTAATATCAGCTGAACGGCTGTAAAGTACATGAGCACTGACTG
AATGCTAGTTCTTACAAGGCA
UFO06864.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-RB | 908 | CG6440-RB | 114..414 | 8..308 | 1505 | 100 | Plus |
Ms-RC | 1065 | CG6440-RC | 131..431 | 8..308 | 1505 | 100 | Plus |
Ms-RA | 925 | CG6440-RA | 131..431 | 8..308 | 1505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24342828..24343039 | 8..219 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 24343102..24343191 | 219..308 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:55:07 has no hits.
UFO06864.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:01 Download gff for
UFO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dms-RA | 123..433 | 1..313 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:20 Download gff for
UFO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 125..435 | 1..313 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:27 Download gff for
UFO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 125..435 | 1..313 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:27 Download gff for
UFO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24342819..24343039 | 1..219 | 98 | -> | Plus |
3R | 24343103..24343191 | 220..308 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:20 Download gff for
UFO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20168541..20168761 | 1..219 | 98 | -> | Plus |
arm_3R | 20168825..20168913 | 220..308 | 100 | == | Plus |