UFO06865.5prime Sequence
1105 bp (992 high quality bases) assembled on 2009-08-31
> UFO06865.5prime
CAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTGTGAAGATT
CCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAATCGGAACGA
GCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGGAACCTTCG
ATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCTGCATCGAT
CTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATGTACTACAG
TGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGAGTACGGAT
GGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCCTGAGCTTC
ATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTCTCCCTGGA
CATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCTTAGTATAG
AGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATTACATTGAG
CCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCTGCGGGAAG
CTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCACCGCCAGT
TGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTAGGGATATT
CGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTGGGGGCAGA
AATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAAGGGCTCCT
TGTCACCATATCTCTCCGTCCGCAACAACGAGGCTATATCGATTTTGGCC
AAGGATAATCCGCACTTTGAGTTCTACGAGGTGGAAAACGGCACCCATCA
TCTGCATCTCCATGCCGCCGAGGATGCGCCGGTTACATTGTGCCCTTCAT
CCAACATCACAGACCTCCTGCTATGACCTCCTGGACTGTGCCGGAAAGGA
AGATAGATCGAGAAACCAAAGCGATTTTCACATGACAACAAAAGCGCAGC
AGTGCAGCTTCAGACATCGTGGCGCGCGGGCCAGGTAGTGTCTATCCTAT
CATATCATAATCTAATCACACTAGCTAGAGATCTGGTCATGACATATGCT
TGGAA
UFO06865.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5704-RB | 1289 | CG5704-RB | 126..1125 | 9..1001 | 4825 | 99.3 | Plus |
| CG5704-RA | 1220 | CG5704-RA | 126..1125 | 9..1001 | 4825 | 99.3 | Plus |
| CG15879-RA | 1389 | CG15879-RA | 126..538 | 4..416 | 730 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2169744..2170692 | 978..33 | 4595 | 99.7 | Minus |
| 3L | 28110227 | 3L | 2168401..2168761 | 416..56 | 680 | 79.2 | Minus |
| 3L | 28110227 | 3L | 2173650..2173960 | 352..42 | 520 | 77.8 | Minus |
| 3L | 28110227 | 3L | 2172387..2172680 | 336..43 | 480 | 77.6 | Minus |
| 3L | 28110227 | 3L | 2171880..2171938 | 850..792 | 235 | 93.2 | Minus |
| 3L | 28110227 | 3L | 2173080..2173195 | 918..804 | 230 | 81.9 | Minus |
| 3L | 28110227 | 3L | 2167889..2167998 | 915..807 | 215 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:53 has no hits.
UFO06865.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:00 Download gff for
UFO06865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5704-RA | 104..1108 | 1..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:46 Download gff for
UFO06865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5704-RA | 121..1125 | 1..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:59 Download gff for
UFO06865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5704-RA | 121..1125 | 1..1001 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:59 Download gff for
UFO06865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2169720..2170692 | 33..999 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:46 Download gff for
UFO06865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2169720..2170692 | 33..999 | 99 | <- | Minus |
