UFO06868.5prime Sequence
1094 bp (986 high quality bases) assembled on 2009-08-31
> UFO06868.5prime
CAGTCGACATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAACCGCACCTG
CTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGAGAAGGAGGC
GGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGATCATCGATA
GCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATAAAGGAGGTT
CCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAACTTTGTCTG
CTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGATCACATCCC
TGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCCGTCCTGGGA
CTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCAGATCAGCAA
GGCATCTAATTATGGATCCTCCAAGTCGGTCGCAAAGGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGGC
CACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA
AAACATATTCTCATAAACCCTTTAGGAAATAGGCAGTTTTCACGTACACG
CCACATCTGCGAATATATGTGTAGAACTGCGAAATCGTCTGTATTCACTC
CAGAGCGATGAAACGTTTCAGTTGCTCATGGAAACGGGTTACCAGTGAAC
CCTATTCATATCACAGCTCACGGTCTTCATGCATACGAATCTGA
UFO06868.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-RE | 1849 | CG4729-RE | 1118..1546 | 9..437 | 2145 | 100 | Plus |
| CG4729-RD | 845 | CG4729-RD | 114..542 | 9..437 | 2145 | 100 | Plus |
| CG4729-RB | 1672 | CG4729-RB | 941..1369 | 9..437 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16382382..16382727 | 354..9 | 1730 | 100 | Minus |
| 3L | 28110227 | 3L | 16382075..16382157 | 437..355 | 415 | 100 | Minus |
| 3L | 28110227 | 3L | 16379425..16379558 | 199..66 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:18 has no hits.
UFO06868.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:58 Download gff for
UFO06868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 933..1377 | 1..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:14 Download gff for
UFO06868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 933..1377 | 1..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:55 Download gff for
UFO06868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 933..1377 | 1..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:55 Download gff for
UFO06868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16382075..16382157 | 355..437 | 100 | <- | Minus |
| 3L | 16382382..16382731 | 1..354 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:14 Download gff for
UFO06868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16375175..16375257 | 355..437 | 100 | <- | Minus |
| arm_3L | 16375482..16375831 | 1..354 | 98 | | Minus |
