UFO06870.5prime Sequence
1113 bp (998 high quality bases) assembled on 2009-08-31
> UFO06870.5prime
CAGTCGACATGAACGCCACACTCAATTCCGCGGGCGGCAAGCGTCAGCTG
CGCTTTCGCGGCGACGTCACCGGCAGCCGAGTGGAGGAACTGCATCATCA
GCAGCAGGAGGAGCAGAAGCAAAAGGCGCCGCTCGCCCAGGATGACGTTG
CAGCGACGCCGACTGCGACGCCGGCAGCGGGCTCAGCGCAGCAGCGACTG
CAGAGCGGAACCGCCGAAACCTGCACAAACACATTCTACGACTTCTTCAA
AGTGGAGATGACACGCGGCTATATGCTGGAGCACGACGAGGAGCGCTATT
CGGCGCGTAGGCAGAAGATCTACAGCTTCATGCGCATACCGCGGGATCTG
GAGCGATTCATGGTGTACGGGATCATGCAGTGCGCCGACTCATTTCTCTA
CATTCACACTTTTCTGCCCGTCCGATTTGTGATGGCCGTTTGGGCCCTAG
TTTCCAGGACGGTGGCAAGAATCTTTCGACTACGCAGCAGCGGACAAAGG
CTGCTATCGCCGGCGGAGATCTGTGATCTGCTGAAGGGCGTCATCTGGAT
GACGGTGACGCTGATAATGCTCCTGGTGGACACGAATCGGGTGTACCACA
TCATCAAGTCACAGTCGATCATCAAGCTGTACATATTCTACAACATGCTG
GAGGTGGGCGACCGGCTGTTGTCCGCTTTTGGTCAGGACACGATCGATGC
TCTCTTCTGGACGGCGACAGAACCAAAGAATTCCAAGCGAGAGCACTTTG
GAGTGCTTACGCACGTTCTCTTCACGCTAATCTATGTCTTCTTGCACAGC
GGACTGATCATGTTTCAGCCACCTGTTTGAATGTGGCGGTGAACTCCAAC
AACAAGGGCCTGCTGACCATCATGATATCGAATAATTTCGTGGAGCTCAA
GGGATCCGTGTTCAAGAAGTTCGAAAAAAACAACCTGTTCCAATTGACCT
GCAGCGATGTACGAAGAGCGATTCCATCTGTTTGTGCTTCTGTTCATTGG
TGGTCATCCAGAACATGAAGGAGTTTGACTGGAAGCATCCACCCAGTTCT
TTTGTTATGCTGCCGACTGCCTTGCCGTGGCTGTCCGAATTCTGAATCGA
TGGGTGGAGACAT
UFO06870.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7218-RB | 2543 | CG7218-RB | 96..1163 | 9..1079 | 5100 | 98.8 | Plus |
| CG7218-RA | 2169 | CG7218-RA | 96..1163 | 9..1079 | 5100 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18163104..18163715 | 818..207 | 3060 | 100 | Minus |
| 3R | 32079331 | 3R | 18164103..18164302 | 208..9 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 18162816..18163029 | 1033..818 | 935 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:55:04 has no hits.
UFO06870.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:55 Download gff for
UFO06870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 92..1163 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:18 Download gff for
UFO06870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 89..1160 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:25 Download gff for
UFO06870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 96..1167 | 9..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:25 Download gff for
UFO06870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18164104..18164302 | 9..207 | 100 | | Minus |
| 3R | 18162801..18163029 | 819..1050 | 96 | <- | Minus |
| 3R | 18163104..18163714 | 208..818 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:18 Download gff for
UFO06870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13988523..13988751 | 819..1050 | 96 | <- | Minus |
| arm_3R | 13988826..13989436 | 208..818 | 100 | <- | Minus |
| arm_3R | 13989826..13990024 | 9..207 | 100 | | Minus |
