UFO06871.5prime Sequence
1119 bp (1010 high quality bases) assembled on 2009-08-31
> UFO06871.5prime
CAGTCGACATGATTAAGTGCCATATGCCGTCGAGTTGGAGACGGCTACGC
AAAATCAGTCGTATTCTAGCGCTGACAGGAAGCAGACAGATACTCACCCA
AGTATTAGCAACCAAAGGAGCAGCAATGGCAGAGGGAGATTCGAAATTTG
GCTTCAAGGACATGGAGAAGGCGTTAGAGACGTTGAAGCTGCTGGAGAGT
CACGACATGCAGTATCGCAAGCTGACGGTGCGCGGTTTGCTTGGCCGGGC
CAAAAGAGTCCTGACAATGACCAAGGCGGAGGAGAAGCTGAAGAACATCA
ATGCGGCCATTGGAGTCTTTGAAAAGTGGCTGGAGGAGAATGGCGGAGGG
GCGTCCAGCAAGAATGCCAAGACAGAGAGCGAGGACAAGGTGGAGACGGT
GCCGGGATTGGGATTCAAGGACAAGGCTGCTGCGGAGGCAACGCTGAGCA
TTTTGGCGGAACGAGATCCGGACTACCAGAGGTTGGCCATCAAGGGATTG
ATTGGCAGCTCCAAGCGTGTCCTGTCAGGCACCAAGAACGAGGACAAGAT
CACGGCCATAAAGGAGGGAGTCCAGGTACTTGAGGATTTCCTCGAAAAGT
TCGAGGCCGAGAATCGTATCAAGGACAATCGAGCATACTTGCCACTCGCC
GTGGTCACCAAACTGCCCGATCCCAAAGATGAGTTGGCTAAGGAGTTTCT
CGAAGCCTATGGCGGCTCCAAGGCCAAGGGTAACTACAAGCACCTGCGCA
CAATGTTCCCCAAAACGGATGAAAAGACCAGCTGGGATATTGTGCGCAAT
CGTCAGCTGTCCAAGTTGCTGGAGCAGATTAAGAGTGAGGAGGCCAAGCT
CTTCGATGCAGAGACCGGGAGCACCCACCGACCTGCACCTGCAGTTGATC
CACTGGGCATACAGTCCGCAGCCGGACAGCTGAAGCAGTACATCGAAAGC
TGGCCAAGAAGACGCCCGAAAAGCGCAAGCAGGAGAGCAGCAGCAGTGCC
AGCGATTCCAGTGCCACCAGCCAGATTCCGATGGCGAGGATAGCCAAAGG
AGAGATAGGAGGAGGCAAGCCTTTCTAGACATCGTTGGCGCGCGGGCCAG
GGTAACTGCTAGTCTATCT
UFO06871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ude-RC | 1473 | CG18410-RC | 46..1082 | 8..1042 | 5090 | 99.6 | Plus |
| Ude-RD | 1517 | CG18410-RD | 1..991 | 54..1042 | 4860 | 99.6 | Plus |
| Ude-RB | 1382 | CG18410-RB | 1..991 | 54..1042 | 4860 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24797986..24798583 | 1042..447 | 2795 | 99.3 | Minus |
| 3R | 32079331 | 3R | 24799364..24799623 | 267..8 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 24799127..24799307 | 448..268 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:40 has no hits.
UFO06871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:54 Download gff for
UFO06871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18410-RA | 41..1099 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:00 Download gff for
UFO06871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ude-RC | 41..1099 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:22 Download gff for
UFO06871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ude-RC | 41..1099 | 1..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:22 Download gff for
UFO06871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24797969..24798581 | 449..1058 | 98 | <- | Minus |
| 3R | 24799127..24799307 | 268..448 | 100 | <- | Minus |
| 3R | 24799364..24799627 | 1..267 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:00 Download gff for
UFO06871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20623691..20624303 | 449..1058 | 98 | <- | Minus |
| arm_3R | 20624849..20625029 | 268..448 | 100 | <- | Minus |
| arm_3R | 20625086..20625349 | 1..267 | 98 | | Minus |
