UFO06872.5prime Sequence
1050 bp (977 high quality bases) assembled on 2009-08-31
> UFO06872.5prime
CAGTCGACATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGGCTGTGGTC
TCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTTGGAGGTGG
ACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAACAATCGAG
TGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATGCCGTGGGC
AACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAACGTCCAGGA
CTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTCCGCCGCTG
ATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACCTGGTGGAA
GCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAGCAGGCCGT
GAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCAATTGACCG
GTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCAGTTTGAAG
TTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGATTGGCGCGA
GCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGGCTCCTGTT
GGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCCGCAAGACC
GGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGTGGTCCGGT
GGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGAGGCCGCAT
TCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGGGGGCCTAT
CCCTACATTGACAACAAGGGCACGTGCAAGTACGATGGCAGCAAGTCCGG
AGCCACCCTCCAGGGATTCGCCGCTATTCCGCCCAAGGACGAGGAGCAGC
TGAGAGTGGTGCCACTCTGGGACCAGTTGCCTGTCGGTGATGTTTGAGAC
TCTAGACTACGCGTGCATCTTATACGACGATGAGTGCACCAGGCGAGCGA
CACTCATCTGTCGTCCGTACGATCGGAGACGATGATTACTGAATCGTCAG
UFO06872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4847-RE | 1308 | CG4847-RE | 36..1041 | 9..998 | 4610 | 98.1 | Plus |
| CG4847-RD | 1501 | CG4847-RD | 229..1234 | 9..998 | 4610 | 98.1 | Plus |
| CG4847-RC | 1313 | CG4847-RC | 41..1046 | 9..998 | 4610 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17513050..17513512 | 476..934 | 2160 | 98.3 | Plus |
| 2R | 25286936 | 2R | 17512458..17512715 | 9..266 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 17512775..17512985 | 266..476 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:19 has no hits.
UFO06872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:53 Download gff for
UFO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RD | 215..1234 | 1..1003 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:35 Download gff for
UFO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RC | 37..1051 | 1..1003 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:29 Download gff for
UFO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RC | 37..1051 | 1..1003 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:29 Download gff for
UFO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17512449..17512715 | 1..266 | 98 | -> | Plus |
| 2R | 17512776..17512984 | 267..475 | 100 | -> | Plus |
| 2R | 17513050..17513593 | 476..1003 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:35 Download gff for
UFO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13399954..13400220 | 1..266 | 98 | -> | Plus |
| arm_2R | 13400281..13400489 | 267..475 | 100 | -> | Plus |
| arm_2R | 13400555..13401098 | 476..1003 | 96 | | Plus |
